Variant report

Variant	rs4550130
Chromosome Location	chr10:4385379-4385380
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10751967	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10795157	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10795158	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10904235	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10904236	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10904237	0.80[ASN][1000 genomes]
rs10904238	0.82[EUR][1000 genomes]
rs11252474	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11252476	0.86[ASN][1000 genomes]
rs11252477	0.86[ASN][1000 genomes]
rs12217543	0.86[ASN][1000 genomes]
rs12219673	0.90[ASN][1000 genomes]
rs12782979	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1571129	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4261192	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4265499	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4272695	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4564225	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4881317	0.81[ASN][1000 genomes]
rs60075506	0.86[ASN][1000 genomes]
rs61829444	0.80[EUR][1000 genomes]
rs6601835	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6601836	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6601840	0.80[EUR][1000 genomes]
rs7082820	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72766472	0.90[ASN][1000 genomes]
rs7900466	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7902863	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7919885	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs927897	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9633757	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894786	chr10:4385379-4441989	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv894787	chr10:4385379-4857717	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4377200-4386200	Weak transcription	Aorta	Aorta
2	chr10:4378000-4386200	Weak transcription	Colon Smooth Muscle	Colon
3	chr10:4380400-4386000	Weak transcription	Fetal Heart	heart
4	chr10:4380400-4386200	Weak transcription	Psoas Muscle	Psoas
5	chr10:4380800-4385400	Weak transcription	Fetal Muscle Leg	muscle
6	chr10:4380800-4386200	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr10:4382400-4389800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr10:4383400-4385400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr10:4385200-4387800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr10:4385200-4388000	Enhancers	Fetal Lung	lung

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