Variant report

Variant	rs927897
Chromosome Location	chr10:4384185-4384186
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:4376764..4379078-chr10:4382397..4384956,2	MCF-7	breast:
2	chr10:4319961..4321650-chr10:4382785..4384705,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10508281	0.80[ASN][1000 genomes]
rs10751967	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10795157	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10795158	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10904235	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10904236	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10904237	0.82[ASN][1000 genomes]
rs11252474	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11252476	0.89[ASN][1000 genomes]
rs11252477	0.89[ASN][1000 genomes]
rs11252478	0.81[ASN][1000 genomes]
rs11252491	0.80[ASN][1000 genomes]
rs11252496	0.80[ASN][1000 genomes]
rs12217543	0.89[ASN][1000 genomes]
rs12219673	0.92[ASN][1000 genomes]
rs12782979	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1571129	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1926808	0.80[ASN][1000 genomes]
rs2182586	0.80[ASN][1000 genomes]
rs4261192	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4265499	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4272695	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4550130	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4564225	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4881317	0.84[ASN][1000 genomes]
rs60075506	0.89[ASN][1000 genomes]
rs61829444	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6601835	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6601836	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6601840	0.80[EUR][1000 genomes]
rs72766472	0.92[ASN][1000 genomes]
rs7900466	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7902863	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7919885	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9633757	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4377200-4386200	Weak transcription	Aorta	Aorta
2	chr10:4378000-4386200	Weak transcription	Colon Smooth Muscle	Colon
3	chr10:4380400-4386000	Weak transcription	Fetal Heart	heart
4	chr10:4380400-4386200	Weak transcription	Psoas Muscle	Psoas
5	chr10:4380800-4385400	Weak transcription	Fetal Muscle Leg	muscle
6	chr10:4380800-4386200	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr10:4382400-4389800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr10:4383400-4385400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr10:4384000-4384200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr10:4384000-4384200	Enhancers	Gastric	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links