Variant report
| Variant | rs2025773 |
|---|---|
| Chromosome Location | chr10:4422320-4422321 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | STAT1 | chr10:4421903-4422493 | Hela-S3 | cervix: | n/a | chr10:4422270-4422284 chr10:4422271-4422282 chr10:4422267-4422287 chr10:4422273-4422281 |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| LINC00703 | TF binding region |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10508281 | 0.91[ASN][1000 genomes] |
| rs10904237 | 0.85[ASN][1000 genomes] |
| rs10904238 | 0.82[ASN][1000 genomes] |
| rs10904244 | 0.81[ASN][1000 genomes] |
| rs10904245 | 0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs10904247 | 0.88[YRI][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs11252478 | 0.84[ASN][1000 genomes] |
| rs11252482 | 0.84[ASN][1000 genomes] |
| rs11252491 | 0.80[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs11252496 | 0.91[ASN][1000 genomes] |
| rs11252503 | 0.87[CHB][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12217939 | 0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12219673 | 0.81[ASN][1000 genomes] |
| rs12569665 | 0.80[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs1468064 | 0.82[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs1468065 | 0.85[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs1926808 | 0.87[ASN][1000 genomes] |
| rs1926809 | 0.87[ASN][1000 genomes] |
| rs2025774 | 0.87[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2025775 | 0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2182586 | 0.91[ASN][1000 genomes] |
| rs4881317 | 0.82[ASN][1000 genomes] |
| rs61829444 | 0.89[ASN][1000 genomes] |
| rs6601840 | 0.83[ASN][1000 genomes] |
| rs7082820 | 0.84[ASN][1000 genomes] |
| rs7095975 | 0.94[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs72766472 | 0.81[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv894786 | chr10:4385379-4441989 | Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv894787 | chr10:4385379-4857717 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 20 gene(s) | inside rSNPs | diseases |
| 3 | esv3391292 | chr10:4421602-4424800 | Weak transcription Enhancers | TF binding regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:4416200-4424000 | Weak transcription | Foreskin Fibroblast Primary Cells skin01 | Skin |
