Variant report

Variant	rs11252639
Chromosome Location	chr10:4691970-4691971
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:4690190..4692263-chr10:4776105..4778922,2	MCF-7	breast:
2	chr10:4554767..4555670-chr10:4691719..4692590,2	MCF-7	breast:
3	chr10:4691020..4693765-chr10:4695253..4697070,2	K562	blood:
4	chr10:4691378..4694078-chr10:4702195..4704638,2	MCF-7	breast:
5	chr10:4683804..4685343-chr10:4691589..4693258,2	MCF-7	breast:
6	chr10:4586883..4588795-chr10:4691830..4693502,2	MCF-7	breast:
7	chr10:3805083..3807904-chr10:4690931..4693769,2	MCF-7	breast:
8	chr10:4690809..4692527-chr10:4700264..4703042,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11252644	0.94[CEU][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11252650	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs313450	0.94[CEU][hapmap];0.95[EUR][1000 genomes]
rs313452	0.89[CEU][hapmap];0.95[EUR][1000 genomes]
rs313454	0.95[EUR][1000 genomes]
rs313490	0.92[EUR][1000 genomes]
rs313491	0.94[EUR][1000 genomes]
rs313494	0.94[EUR][1000 genomes]
rs45608837	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73595210	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894787	chr10:4385379-4857717	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv1798456	chr10:4689138-4731081	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv1817443	chr10:4689138-4731081	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv1831014	chr10:4689138-4731081	Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	esv1838419	chr10:4689138-4731081	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	esv1805926	chr10:4689842-4720626	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	esv1809203	chr10:4689842-4720626	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	esv1840346	chr10:4689842-4720626	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	esv1842933	chr10:4689842-4720626	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	esv1848476	chr10:4689842-4720626	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4680600-4694200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr10:4680600-4703800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:4680800-4692800	Weak transcription	Aorta	Aorta
4	chr10:4682800-4693800	Weak transcription	NHEK	skin
5	chr10:4682800-4694000	Weak transcription	HMEC	breast
6	chr10:4684400-4692200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr10:4685800-4692600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr10:4688000-4692600	Weak transcription	Fetal Kidney	kidney
9	chr10:4688800-4694800	Enhancers	Dnd41	blood
10	chr10:4689400-4692400	Weak transcription	NH-A	brain
11	chr10:4689400-4692600	Weak transcription	HSMM	muscle
12	chr10:4689400-4694800	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr10:4689600-4692200	Weak transcription	NHDF-Ad	bronchial
14	chr10:4689800-4692200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr10:4689800-4692400	Weak transcription	Adipose Nuclei	Adipose
16	chr10:4690000-4692200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr10:4690000-4692200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr10:4690000-4697200	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr10:4690200-4692200	Weak transcription	Osteobl	bone
20	chr10:4690600-4692000	Weak transcription	HUVEC	blood vessel
21	chr10:4691000-4693200	Enhancers	Stomach Smooth Muscle	stomach
22	chr10:4691200-4692200	Weak transcription	Fetal Stomach	stomach
23	chr10:4691200-4692200	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr10:4691400-4692600	Weak transcription	Left Ventricle	heart
25	chr10:4691400-4692800	Weak transcription	Psoas Muscle	Psoas
26	chr10:4691600-4692000	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr10:4691600-4692600	Weak transcription	Fetal Muscle Trunk	muscle
28	chr10:4691600-4692600	Weak transcription	Fetal Muscle Leg	muscle
29	chr10:4691600-4692800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr10:4691600-4694600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr10:4691800-4693400	Enhancers	Muscle Satellite Cultured Cells	--

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