Variant report

Variant	rs313450
Chromosome Location	chr10:4688963-4688964
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:4681477..4684219-chr10:4687339..4690160,2	K562	blood:
2	chr10:3826834..3829522-chr10:4687271..4690305,3	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AKR1C2-9	chr10:4688895-4689117	NONHSAT011104
2	lnc-AKR1C2-9	chr10:4688895-4688992	NONHSAT011103

Variant related genes	Relation type
ENSG00000067082	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10444199	0.89[JPT][hapmap]
rs11252639	0.95[EUR][1000 genomes]
rs11252641	1.00[CHB][hapmap]
rs11252644	0.84[CEU][hapmap];0.94[EUR][1000 genomes]
rs11252650	0.94[EUR][1000 genomes]
rs167511	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2123352	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2647337	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs313452	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs313454	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs313457	0.96[ASN][1000 genomes]
rs313490	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs313491	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs313494	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs386948	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs45608837	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894787	chr10:4385379-4857717	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4680600-4694200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr10:4680600-4703800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:4680800-4692800	Weak transcription	Aorta	Aorta
4	chr10:4682800-4690800	Weak transcription	Psoas Muscle	Psoas
5	chr10:4682800-4693800	Weak transcription	NHEK	skin
6	chr10:4682800-4694000	Weak transcription	HMEC	breast
7	chr10:4683800-4689000	Weak transcription	HUVEC	blood vessel
8	chr10:4684400-4692200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr10:4685800-4692600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr10:4686800-4689200	Weak transcription	Adipose Nuclei	Adipose
11	chr10:4688000-4692600	Weak transcription	Fetal Kidney	kidney
12	chr10:4688400-4689000	Weak transcription	HSMM	muscle
13	chr10:4688400-4690000	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr10:4688800-4689400	Enhancers	Stomach Smooth Muscle	stomach
15	chr10:4688800-4689600	Enhancers	NHDF-Ad	bronchial
16	chr10:4688800-4689800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr10:4688800-4689800	Enhancers	Fetal Heart	heart
18	chr10:4688800-4689800	Enhancers	HSMMtube	muscle
19	chr10:4688800-4690000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr10:4688800-4690000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr10:4688800-4690200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr10:4688800-4694800	Enhancers	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links