Variant report

Variant	rs45608837
Chromosome Location	chr10:4705044-4705045
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:21)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:21 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:4704812..4707104-chr10:4757845..4760690,2	MCF-7	breast:
2	chr10:4704028..4707695-chr10:4796284..4798657,3	MCF-7	breast:
3	chr10:4703699..4707665-chr10:4763385..4769263,9	MCF-7	breast:
4	chr10:4692495..4696289-chr10:4704356..4708036,4	MCF-7	breast:
5	chr10:3873499..3876423-chr10:4703265..4705596,2	MCF-7	breast:
6	chr10:4703565..4707087-chr10:4805209..4809008,5	MCF-7	breast:
7	chr10:4704371..4707713-chr10:4716720..4722125,6	MCF-7	breast:
8	chr10:4703462..4705241-chr10:4867377..4869732,2	MCF-7	breast:
9	chr10:3928607..3931321-chr10:4704899..4706515,2	MCF-7	breast:
10	chr10:4698769..4700286-chr10:4703854..4706647,2	MCF-7	breast:
11	chr10:3826124..3828322-chr10:4703952..4705855,2	MCF-7	breast:
12	chr10:4701957..4706155-chr10:4806561..4810168,4	MCF-7	breast:
13	chr10:4702931..4705070-chr10:4793409..4795730,2	MCF-7	breast:
14	chr10:4702583..4705681-chr10:4760032..4763003,3	MCF-7	breast:
15	chr10:4702078..4707095-chr10:4773802..4779822,17	MCF-7	breast:
16	chr10:4702582..4706500-chr10:4772852..4778695,11	MCF-7	breast:
17	chr10:3826531..3829681-chr10:4703609..4706430,7	MCF-7	breast:
18	chr10:4704243..4706913-chr10:4720436..4722129,2	MCF-7	breast:
19	chr10:4320010..4324018-chr10:4702839..4706546,5	MCF-7	breast:
20	chr10:4694173..4696454-chr10:4704960..4707093,2	K562	blood:
21	chr10:4701367..4707262-chr10:4764196..4772300,19	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000165568	Chromatin interaction
ENSG00000231298	Chromatin interaction
ENSG00000067082	Chromatin interaction
ENSG00000230573	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11252639	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11252644	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11252650	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs313450	0.94[EUR][1000 genomes]
rs313452	0.94[EUR][1000 genomes]
rs313454	0.94[EUR][1000 genomes]
rs313490	0.92[EUR][1000 genomes]
rs313491	0.95[EUR][1000 genomes]
rs313494	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894787	chr10:4385379-4857717	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv1798456	chr10:4689138-4731081	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv1817443	chr10:4689138-4731081	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv1831014	chr10:4689138-4731081	Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	esv1838419	chr10:4689138-4731081	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	esv1805926	chr10:4689842-4720626	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	esv1809203	chr10:4689842-4720626	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	esv1840346	chr10:4689842-4720626	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	esv1842933	chr10:4689842-4720626	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	esv1848476	chr10:4689842-4720626	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
11	esv1800904	chr10:4700968-4710298	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
12	esv1793713	chr10:4700968-4711764	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
13	nsv511436	chr10:4700968-4711764	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
14	nsv549863	chr10:4704709-4710241	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
15	nsv549864	chr10:4704709-4710298	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
16	nsv549865	chr10:4704709-4715476	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4696400-4705200	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr10:4699800-4705200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr10:4701200-4705400	Weak transcription	Fetal Brain Male	brain
4	chr10:4702600-4708000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr10:4703000-4705200	Enhancers	Fetal Muscle Trunk	muscle
6	chr10:4703000-4705800	Enhancers	Fetal Muscle Leg	muscle
7	chr10:4703000-4705800	Enhancers	Ovary	ovary
8	chr10:4703200-4705200	Enhancers	Left Ventricle	heart
9	chr10:4703400-4705200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
10	chr10:4703600-4706000	Enhancers	Placenta	Placenta
11	chr10:4703600-4706600	Enhancers	Colon Smooth Muscle	Colon
12	chr10:4703600-4706600	Enhancers	NHLF	lung
13	chr10:4703600-4707000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr10:4703600-4707000	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr10:4703600-4708200	Enhancers	NHDF-Ad	bronchial
16	chr10:4703600-4708400	Enhancers	Fetal Intestine Small	intestine
17	chr10:4703800-4705200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr10:4703800-4705200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr10:4703800-4705600	Enhancers	Esophagus	oesophagus
20	chr10:4703800-4705800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr10:4703800-4705800	Enhancers	Pancreas	Pancrea
22	chr10:4703800-4706000	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr10:4703800-4706000	Enhancers	Fetal Lung	lung
24	chr10:4703800-4706400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr10:4703800-4707000	Enhancers	Placenta Amnion	Placenta Amnion
26	chr10:4703800-4707000	Enhancers	Sigmoid Colon	Sigmoid Colon
27	chr10:4703800-4707200	Enhancers	Fetal Intestine Large	intestine
28	chr10:4703800-4708000	Enhancers	Dnd41	blood
29	chr10:4704000-4705400	Enhancers	Aorta	Aorta
30	chr10:4704000-4705400	Flanking Active TSS	HSMMtube	muscle
31	chr10:4704000-4705600	Enhancers	Gastric	stomach
32	chr10:4704000-4705800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr10:4704000-4706000	Enhancers	HUES6 Cell Line	embryonic stem cell
34	chr10:4704000-4706000	Enhancers	Duodenum Mucosa	Duodenum
35	chr10:4704000-4707000	Enhancers	Breast Myoepithelial Primary Cells	Breast
36	chr10:4704000-4707600	Enhancers	HMEC	breast
37	chr10:4704200-4705400	Weak transcription	Spleen	Spleen
38	chr10:4704200-4705600	Enhancers	Brain Anterior Caudate	brain
39	chr10:4704200-4705600	Enhancers	Hela-S3	cervix
40	chr10:4704200-4705800	Enhancers	Liver	Liver
41	chr10:4704200-4705800	Enhancers	Brain Hippocampus Middle	brain
42	chr10:4704200-4706000	Enhancers	ES-I3 Cell Line	embryonic stem cell
43	chr10:4704200-4706000	Enhancers	Duodenum Smooth Muscle	Duodenum
44	chr10:4704200-4706000	Enhancers	Fetal Stomach	stomach
45	chr10:4704200-4706200	Enhancers	K562	blood
46	chr10:4704200-4707800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr10:4704200-4708000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr10:4704200-4708600	Enhancers	Stomach Mucosa	stomach
49	chr10:4704400-4705200	Flanking Active TSS	A549	lung
50	chr10:4704400-4705600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links