Variant report

Variant	rs1125410
Chromosome Location	chr9:101671614-101671615
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:101648521..101650624-chr9:101669197..101672005,2	K562	blood:
2	chr9:101669529..101672410-chr9:101684628..101686757,2	K562	blood:
3	chr9:101670503..101672702-chr9:101838326..101840575,2	K562	blood:
4	chr9:101663219..101665615-chr9:101669878..101672557,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs16918058	1.00[EUR][1000 genomes]
rs55803862	1.00[EUR][1000 genomes]
rs60327679	1.00[EUR][1000 genomes]
rs60878369	1.00[EUR][1000 genomes]
rs61478524	1.00[EUR][1000 genomes]
rs7034869	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73503720	1.00[EUR][1000 genomes]
rs73503727	1.00[EUR][1000 genomes]
rs73503740	1.00[EUR][1000 genomes]
rs73503742	1.00[EUR][1000 genomes]
rs73503747	1.00[EUR][1000 genomes]
rs73503749	1.00[EUR][1000 genomes]
rs73503754	1.00[EUR][1000 genomes]
rs73655904	1.00[EUR][1000 genomes]
rs7862816	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs911931	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv614936	chr9:101182698-101680380	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv893614	chr9:101340316-101671634	Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv893615	chr9:101356515-101678036	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101665800-101675600	Enhancers	Fetal Muscle Leg	muscle
2	chr9:101667400-101672800	Enhancers	HSMMtube	muscle
3	chr9:101668400-101673400	Enhancers	Adipose Nuclei	Adipose
4	chr9:101668600-101671800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr9:101668600-101671800	Enhancers	Fetal Lung	lung
6	chr9:101668600-101672200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr9:101668600-101672200	Enhancers	Osteobl	bone
8	chr9:101668600-101672400	Enhancers	Muscle Satellite Cultured Cells	--
9	chr9:101668600-101672600	Enhancers	NHDF-Ad	bronchial
10	chr9:101668600-101672600	Enhancers	NHLF	lung
11	chr9:101668600-101672800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr9:101668800-101671800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr9:101668800-101671800	Enhancers	Fetal Stomach	stomach
14	chr9:101668800-101672600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr9:101668800-101672600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr9:101669200-101671800	Enhancers	Colon Smooth Muscle	Colon
17	chr9:101669200-101672000	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr9:101670000-101672600	Enhancers	Pancreas	Pancrea
19	chr9:101670600-101671800	Enhancers	Brain Cingulate Gyrus	brain
20	chr9:101670600-101672600	Enhancers	Hela-S3	cervix
21	chr9:101670600-101672600	Enhancers	NH-A	brain
22	chr9:101670800-101673400	Weak transcription	Spleen	Spleen
23	chr9:101670800-101678800	Weak transcription	Fetal Heart	heart
24	chr9:101671000-101671800	Enhancers	Rectal Smooth Muscle	rectum
25	chr9:101671200-101671800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr9:101671200-101679000	Weak transcription	Right Ventricle	heart
27	chr9:101671200-101679600	Weak transcription	Gastric	stomach
28	chr9:101671400-101671800	Enhancers	Fetal Kidney	kidney
29	chr9:101671400-101672200	Enhancers	HSMM	muscle
30	chr9:101671400-101672400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr9:101671400-101672400	Weak transcription	Duodenum Mucosa	Duodenum
32	chr9:101671400-101672600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr9:101671400-101673400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr9:101671400-101673400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr9:101671400-101673400	Weak transcription	Brain Hippocampus Middle	brain
36	chr9:101671400-101673400	Weak transcription	Ovary	ovary
37	chr9:101671400-101674000	Weak transcription	Left Ventricle	heart
38	chr9:101671400-101674800	Weak transcription	Placenta	Placenta
39	chr9:101671400-101674800	Weak transcription	Lung	lung
40	chr9:101671400-101674800	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr9:101671400-101678000	Weak transcription	Brain Substantia Nigra	brain
42	chr9:101671400-101679800	Weak transcription	Right Atrium	heart
43	chr9:101671600-101671800	Enhancers	Stomach Smooth Muscle	stomach
44	chr9:101671600-101672000	Weak transcription	Fetal Muscle Trunk	muscle
45	chr9:101671600-101672400	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr9:101671600-101672800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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