Variant report

Variant	rs16918058
Chromosome Location	chr9:101679399-101679400
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:101558625..101560177-chr9:101679192..101681507,2	K562	blood:
2	chr9:101677470..101680255-chr9:101690739..101694111,3	K562	blood:
3	chr9:101648399..101651466-chr9:101677907..101680771,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-COL15A1-1	chr9:101678729-101679950	XLOC_007486
2	lnc-COL15A1-1	chr9:101678728-101679950	NONHSAT133627

Variant related genes	Relation type
ENSG00000165138	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1125410	1.00[EUR][1000 genomes]
rs55803862	1.00[EUR][1000 genomes]
rs60327679	1.00[EUR][1000 genomes]
rs60878369	1.00[EUR][1000 genomes]
rs61478524	1.00[EUR][1000 genomes]
rs7034869	1.00[EUR][1000 genomes]
rs73503720	1.00[EUR][1000 genomes]
rs73503727	1.00[EUR][1000 genomes]
rs73503740	1.00[EUR][1000 genomes]
rs73503742	1.00[EUR][1000 genomes]
rs73503747	1.00[EUR][1000 genomes]
rs73503749	1.00[EUR][1000 genomes]
rs73503754	1.00[EUR][1000 genomes]
rs73655904	1.00[EUR][1000 genomes]
rs7862816	1.00[EUR][1000 genomes]
rs911931	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv614936	chr9:101182698-101680380	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv614953	chr9:101671634-101715598	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101671200-101679600	Weak transcription	Gastric	stomach
2	chr9:101671400-101679800	Weak transcription	Right Atrium	heart
3	chr9:101673600-101684600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr9:101673800-101680600	Weak transcription	Fetal Kidney	kidney
5	chr9:101675200-101679400	Weak transcription	Lung	lung
6	chr9:101677400-101680800	Enhancers	Adipose Nuclei	Adipose
7	chr9:101677600-101680800	Enhancers	Fetal Muscle Leg	muscle
8	chr9:101678000-101682400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr9:101678200-101680600	Enhancers	Placenta	Placenta
10	chr9:101678200-101680800	Enhancers	Colon Smooth Muscle	Colon
11	chr9:101678200-101680800	Enhancers	Ovary	ovary
12	chr9:101678200-101682200	Enhancers	Pancreas	Pancrea
13	chr9:101678600-101679600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr9:101678600-101680400	Enhancers	Fetal Muscle Trunk	muscle
15	chr9:101678600-101680600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr9:101678800-101679400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr9:101678800-101679400	Enhancers	Fetal Thymus	thymus
18	chr9:101678800-101679600	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr9:101678800-101680200	Enhancers	Fetal Heart	heart
20	chr9:101678800-101680400	Enhancers	Fetal Lung	lung
21	chr9:101678800-101680400	Enhancers	Fetal Stomach	stomach
22	chr9:101678800-101680600	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr9:101678800-101680600	Enhancers	HSMM	muscle
24	chr9:101678800-101681000	Enhancers	Fetal Intestine Large	intestine
25	chr9:101679000-101680400	Enhancers	Left Ventricle	heart
26	chr9:101679000-101680400	Enhancers	Right Ventricle	heart
27	chr9:101679000-101680600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr9:101679000-101680600	Enhancers	Spleen	Spleen
29	chr9:101679000-101681400	Enhancers	Skeletal Muscle Male	skeletal muscle
30	chr9:101679200-101679400	Flanking Active TSS	K562	blood
31	chr9:101679200-101679600	Enhancers	HUES64 Cell Line	embryonic stem cell
32	chr9:101679200-101679600	Enhancers	iPS-20b Cell Line	embryonic stem cell
33	chr9:101679200-101680600	Enhancers	Stomach Smooth Muscle	stomach
34	chr9:101679200-101680800	Enhancers	HSMMtube	muscle

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