Variant report

Variant	rs11265076
Chromosome Location	chr1:154074299-154074300
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:154068921..154073059-chr1:154073326..154076408,3	MCF-7	breast:
2	chr1:154070276..154072411-chr1:154073394..154075388,2	K562	blood:

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10127983	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs10559	0.87[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs10796986	0.89[ASN][1000 genomes]
rs10908557	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs10908558	0.87[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs10908627	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs1110165	0.87[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs11264680	0.87[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs11264743	0.93[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs11264865	0.89[ASN][1000 genomes]
rs11264866	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs11264871	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.87[ASN][1000 genomes]
rs11264873	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.87[ASN][1000 genomes]
rs11264875	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11264886	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs11264895	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11264964	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11264974	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11265036	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11265040	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11265049	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11265082	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11265099	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11265122	1.00[YRI][hapmap]
rs11581644	0.87[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs11586701	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12021641	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12028398	0.87[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs12032914	0.87[CHB][hapmap];0.92[JPT][hapmap];0.89[YRI][hapmap]
rs12033835	0.87[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs12048137	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12049128	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12403956	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs12408260	0.89[ASN][1000 genomes]
rs12564669	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs1572788	0.87[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs3748848	0.87[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs3791187	0.87[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs4521985	1.00[YRI][hapmap]
rs4845357	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs4845583	0.87[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs4845600	1.00[YRI][hapmap]
rs4845601	1.00[YRI][hapmap]
rs58300038	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61542760	0.89[ASN][1000 genomes]
rs6427457	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6659053	0.82[YRI][hapmap]
rs6667928	1.00[YRI][hapmap]
rs6670019	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6672856	0.93[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6678826	1.00[YRI][hapmap]
rs6679907	0.89[ASN][1000 genomes]
rs6680140	0.87[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs6701341	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6703545	0.89[ASN][1000 genomes]
rs7521303	0.95[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7535778	0.83[YRI][hapmap]
rs7544502	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7547663	0.82[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs7552737	0.94[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.90[YRI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8450	0.87[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs946682	0.87[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999364	chr1:153622634-154419436	Strong transcription Genic enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	286 gene(s)	inside rSNPs	diseases
2	nsv535175	chr1:153622634-154419436	Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	286 gene(s)	inside rSNPs	diseases
3	nsv532551	chr1:153732039-154192279	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	233 gene(s)	inside rSNPs	diseases
4	esv1830240	chr1:153885261-154370938	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	239 gene(s)	inside rSNPs	diseases
5	nsv948413	chr1:153974621-154797272	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
6	nsv1000402	chr1:153991106-154527053	Strong transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	106 gene(s)	inside rSNPs	diseases
7	nsv947327	chr1:154067393-154086846	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
8	nsv520398	chr1:154068196-154141908	Strong transcription Flanking Active TSS Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
9	nsv1000153	chr1:154074249-154152417	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:154071400-154076800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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