Variant report

Variant	rs11264743
Chromosome Location	chr1:153941514-153941515
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr1:153938969-153941793	SK-N-SH	brain:	n/a	chr1:153939837-153939846
2	POLR2A	chr1:153941408-153941679	K562	blood:	n/a	n/a

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:153738608..153741004-chr1:153939988..153941617,2	MCF-7	breast:
2	chr1:153939660..153941891-chr17:61903372..61905744,2	MCF-7	breast:
3	chr1:153581488..153584174-chr1:153940194..153943077,2	MCF-7	breast:
4	chr1:153742918..153749628-chr1:153933334..153942122,16	MCF-7	breast:
5	chr1:153580618..153585586-chr1:153936399..153942199,7	MCF-7	breast:
6	chr1:153938202..153942686-chr1:154154566..154158952,5	MCF-7	breast:
7	chr1:153940285..153941977-chr1:154154150..154156390,2	MCF-7	breast:
8	chr1:153939104..153942755-chr1:154191760..154194945,4	MCF-7	breast:
9	chr1:153747624..153749302-chr1:153940489..153942860,2	MCF-7	breast:
10	chr1:153939194..153941936-chr6:27857839..27860043,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CREB3L4-2	chr1:153940998-153941830	NONHSAT006566

No data

Variant related genes	Relation type
CREB3L4	TF binding region
SLC39A1	TF binding region
ENSG00000143569	Chromatin interaction
ENSG00000188643	Chromatin interaction
ENSG00000197153	Chromatin interaction
ENSG00000143624	Chromatin interaction
ENSG00000087191	Chromatin interaction
ENSG00000143549	Chromatin interaction
ENSG00000143612	Chromatin interaction
ENSG00000143554	Chromatin interaction
ENSG00000108592	Chromatin interaction

Extended variants
information (count: 122 )
Associated
traits (count: 8 )

rSNPs within LD-proxies of this variant (count:116)

rs_ID	r²[population]
rs10127983	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.86[TSI][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1043608	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10559	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.87[MEX][hapmap];0.97[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10796968	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10908557	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.89[TSI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10908558	1.00[ASW][hapmap];0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.87[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10908627	0.81[ASW][hapmap];0.87[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.81[MKK][hapmap]
rs1110165	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.85[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11264532	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.86[TSI][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11264559	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11264567	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11264619	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11264620	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11264680	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.87[MEX][hapmap];0.97[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11264734	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11264763	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11264866	0.82[ASW][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.89[YRI][hapmap]
rs11264871	0.94[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap]
rs11264873	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs11264875	0.94[CHB][hapmap];0.88[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.86[TSI][hapmap]
rs11264886	0.94[CHB][hapmap];0.88[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.86[TSI][hapmap]
rs11264964	0.94[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.81[TSI][hapmap];0.89[YRI][hapmap]
rs11264974	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs11265040	0.94[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap]
rs11265049	0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs11265076	0.93[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs11265082	0.82[ASW][hapmap];0.94[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.96[MEX][hapmap];0.88[MKK][hapmap];0.89[YRI][hapmap]
rs11265099	0.82[ASW][hapmap];0.94[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.95[MEX][hapmap];0.91[MKK][hapmap]
rs11265122	0.95[LWK][hapmap];0.81[MKK][hapmap];0.89[YRI][hapmap]
rs11577942	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11581644	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.91[MEX][hapmap];0.97[MKK][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11583152	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11583896	0.84[AFR][1000 genomes]
rs11585416	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11586075	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11586593	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11586701	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs11586830	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11587151	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11589043	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11589857	0.93[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11590099	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11591134	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12021641	0.82[ASW][hapmap];0.94[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.91[MEX][hapmap];0.83[MKK][hapmap];0.80[YRI][hapmap]
rs12022158	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12022730	0.80[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12023699	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12027783	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12028398	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12032914	1.00[ASW][hapmap];0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];0.87[MEX][hapmap];1.00[MKK][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12033835	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.85[MKK][hapmap];0.86[TSI][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12038577	0.82[ASN][1000 genomes]
rs12041850	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12041920	0.94[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12042562	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12042989	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.86[TSI][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12043350	1.00[ASW][hapmap];0.94[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.83[MEX][hapmap];1.00[MKK][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12048137	0.94[CHB][hapmap];0.88[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.86[TSI][hapmap]
rs12401565	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.86[TSI][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12403956	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12406003	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12409811	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12564669	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12567313	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1547766	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1547767	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1572788	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.87[MEX][hapmap];0.97[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34805562	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3748848	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.87[MEX][hapmap];0.97[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3748849	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3791187	1.00[ASW][hapmap];0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.87[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4363451	0.85[AFR][1000 genomes]
rs4508047	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4520447	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4521985	0.95[LWK][hapmap];0.80[MKK][hapmap];0.89[YRI][hapmap]
rs4595397	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4612664	0.82[ASN][1000 genomes]
rs4845357	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.87[MKK][hapmap];0.91[TSI][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4845358	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4845576	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4845578	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4845583	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4845585	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4845600	0.95[LWK][hapmap];0.81[MKK][hapmap];0.89[YRI][hapmap]
rs4845601	0.95[LWK][hapmap];0.81[MKK][hapmap];0.89[YRI][hapmap]
rs58095661	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59308681	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59678326	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60150125	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61219911	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6427329	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6659053	0.86[LWK][hapmap]
rs6659220	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6664278	0.82[LWK][hapmap]
rs6666703	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6667928	0.95[LWK][hapmap];0.81[MKK][hapmap];0.89[YRI][hapmap]
rs6671132	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6672856	0.87[CHB][hapmap];0.91[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap]
rs6678826	0.95[LWK][hapmap];0.83[MKK][hapmap];0.89[YRI][hapmap]
rs6680140	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.87[MEX][hapmap];0.97[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6694061	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6700451	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6701341	0.82[ASW][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.89[YRI][hapmap]
rs6724	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72694220	0.85[AFR][1000 genomes]
rs72694231	0.85[AFR][1000 genomes]
rs72694234	0.82[ASN][1000 genomes]
rs7521303	0.88[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs7524739	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7537691	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7547663	0.92[CHB][hapmap];0.91[JPT][hapmap];0.89[YRI][hapmap]
rs7552274	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7552737	0.82[ASW][hapmap];0.94[CHB][hapmap];0.88[CHD][hapmap];0.80[GIH][hapmap];0.94[JPT][hapmap];0.86[LWK][hapmap];0.96[MEX][hapmap];0.88[MKK][hapmap];0.81[TSI][hapmap];0.80[YRI][hapmap]
rs8450	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.87[MEX][hapmap];0.97[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs946682	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.87[MEX][hapmap];1.00[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9660089	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999364	chr1:153622634-154419436	Strong transcription Genic enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	286 gene(s)	inside rSNPs	diseases
2	nsv535175	chr1:153622634-154419436	Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	286 gene(s)	inside rSNPs	diseases
3	nsv531892	chr1:153671910-153954090	Flanking Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
4	nsv532551	chr1:153732039-154192279	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	233 gene(s)	inside rSNPs	diseases
5	esv1830240	chr1:153885261-154370938	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	239 gene(s)	inside rSNPs	diseases
6	nsv532552	chr1:153912047-153950752	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	101 gene(s)	inside rSNPs	diseases

mRNA abundance (count:8)

SNP	Gene	Cis/trans	Tissue	Source
rs11264743	RAB13	cis	lymphoblastoid	seeQTL
rs11264743	SPRR2D	cis	parietal	SCAN
rs11264743	SLC27A3	cis	cerebellum	SCAN
rs11264743	CRTC2	cis	lymphoblastoid	seeQTL
rs11264743	TDRD10	cis	parietal	SCAN
rs11264743	CRTC2	cis	cerebellum	SCAN
rs11264743	FLG	cis	parietal	SCAN
rs11264743	LASS2	cis	parietal	SCAN

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:153938800-153941600	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr1:153939400-153941600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr1:153939400-153941800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr1:153939400-153942000	Active TSS	iPS-20b Cell Line	embryonic stem cell
5	chr1:153939600-153941600	Active TSS	HUES64 Cell Line	embryonic stem cell
6	chr1:153940400-153941600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr1:153940400-153941600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr1:153940400-153941800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
9	chr1:153940400-153941800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr1:153940400-153941800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
11	chr1:153940400-153941800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr1:153940400-153942000	Enhancers	Spleen	Spleen
13	chr1:153940400-153942200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr1:153940600-153941600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr1:153940600-153941600	Flanking Active TSS	GM12878-XiMat	blood
16	chr1:153940600-153941800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr1:153940600-153942000	Flanking Active TSS	Primary hematopoietic stem cells	blood
18	chr1:153940800-153941800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr1:153940800-153941800	Enhancers	Primary T cells fromperipheralblood	blood
20	chr1:153940800-153941800	Enhancers	Placenta	Placenta
21	chr1:153940800-153944200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr1:153940800-153945600	Weak transcription	Primary T cells from cord blood	blood
23	chr1:153940800-153946200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr1:153940800-153947000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr1:153941000-153941600	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr1:153941000-153941600	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
27	chr1:153941000-153941600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
28	chr1:153941000-153941600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr1:153941000-153941600	Flanking Active TSS	Fetal Brain Male	brain
30	chr1:153941000-153941600	Flanking Active TSS	Fetal Brain Female	brain
31	chr1:153941000-153941800	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
32	chr1:153941000-153942000	Enhancers	Placenta Amnion	Placenta Amnion
33	chr1:153941000-153942000	Enhancers	Sigmoid Colon	Sigmoid Colon
34	chr1:153941000-153942400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
35	chr1:153941000-153944000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr1:153941000-153944200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr1:153941000-153946000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr1:153941000-153946200	Weak transcription	Small Intestine	intestine
39	chr1:153941200-153941600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr1:153941200-153941600	Flanking Active TSS	Fetal Kidney	kidney
41	chr1:153941200-153941600	Enhancers	Lung	lung
42	chr1:153941200-153941600	Flanking Active TSS	HepG2	liver
43	chr1:153941200-153941600	Flanking Active TSS	K562	blood
44	chr1:153941200-153941800	Enhancers	Liver	Liver
45	chr1:153941200-153941800	Enhancers	Brain Inferior Temporal Lobe	brain
46	chr1:153941200-153941800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
47	chr1:153941200-153941800	Enhancers	Gastric	stomach
48	chr1:153941200-153941800	Enhancers	HMEC	breast
49	chr1:153941200-153942000	Enhancers	Primary B cells from peripheral blood	blood
50	chr1:153941200-153942000	Flanking Active TSS	Brain Germinal Matrix	brain

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