The 2.0 version of rSNPBase

Variant report

Variant rs11586593
Chromosome Location chr1:153904214-153904215
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:124 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:153896600-153906400 Weak transcription Small Intestine intestine
2 chr1:153896600-153906400 Weak transcription NH-A brain
3 chr1:153896600-153908200 Weak transcription Stomach Mucosa stomach
4 chr1:153896600-153908200 Weak transcription HSMM muscle
5 chr1:153896800-153904600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
6 chr1:153896800-153907200 Weak transcription HSMMtube muscle
7 chr1:153896800-153908000 Weak transcription Fetal Kidney kidney
8 chr1:153896800-153910200 Weak transcription ES-I3 Cell Line embryonic stem cell
9 chr1:153896800-153917600 Weak transcription Pancreatic Islets Pancreatic Islet
10 chr1:153897000-153907400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
11 chr1:153897000-153908000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
12 chr1:153897000-153908000 Weak transcription HepG2 liver
13 chr1:153897000-153908200 Weak transcription HMEC breast
14 chr1:153897000-153916400 Weak transcription Fetal Brain Male brain
15 chr1:153897200-153904600 Weak transcription Primary T helper naive cells from peripheral blood blood
16 chr1:153897200-153904600 Weak transcription Primary T killer memory cells from peripheral blood blood
17 chr1:153897200-153905000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
18 chr1:153897200-153910200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
19 chr1:153897400-153916600 Weak transcription Fetal Heart heart
20 chr1:153901000-153913800 Strong transcription Primary Natural Killer cells fromperipheralblood blood
21 chr1:153901000-153915400 Strong transcription Primary neutrophils fromperipheralblood blood
22 chr1:153901000-153915600 Strong transcription Primary hematopoietic stem cells short term culture blood
23 chr1:153901000-153916400 Strong transcription Fetal Thymus thymus
24 chr1:153901200-153910200 Strong transcription Primary T cells fromperipheralblood blood
25 chr1:153901200-153912800 Strong transcription Stomach Smooth Muscle stomach
26 chr1:153901200-153914800 Strong transcription Primary T regulatory cells fromperipheralblood blood
27 chr1:153901200-153915600 Strong transcription Primary T cells from cord blood blood
28 chr1:153901400-153905400 Strong transcription Primary hematopoietic stem cells blood
29 chr1:153901400-153913600 Strong transcription Skeletal Muscle Female skeletal muscle
30 chr1:153901400-153913600 Strong transcription Monocytes-CD14+_RO01746 blood
31 chr1:153901400-153914800 Strong transcription Primary B cells from cord blood blood
32 chr1:153901400-153915800 Strong transcription H9 Cell Line embryonic stem cell
33 chr1:153901400-153915800 Strong transcription Duodenum Smooth Muscle Duodenum
34 chr1:153901400-153916400 Strong transcription H1 Derived Mesenchymal Stem Cells ES cell derived
35 chr1:153901400-153916400 Strong transcription Brain Germinal Matrix brain
36 chr1:153901400-153916400 Strong transcription Fetal Intestine Large intestine
37 chr1:153901400-153916600 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
38 chr1:153901400-153916600 Strong transcription Fetal Stomach stomach
39 chr1:153901400-153916800 Strong transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
40 chr1:153901400-153916800 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
41 chr1:153901400-153917200 Strong transcription Fetal Intestine Small intestine
42 chr1:153901600-153908000 Weak transcription Muscle Satellite Cultured Cells --
43 chr1:153901600-153908600 Strong transcription Primary T helper naive cells fromperipheralblood blood
44 chr1:153901600-153913800 Strong transcription Primary T helper cells PMA-I stimulated --
45 chr1:153901600-153913800 Strong transcription Primary mononuclear cells fromperipheralblood Blood
46 chr1:153901600-153915200 Strong transcription Skeletal Muscle Male skeletal muscle
47 chr1:153901600-153915800 Strong transcription Rectal Mucosa Donor 29 rectum
48 chr1:153901600-153915800 Strong transcription Rectal Mucosa Donor 31 rectum
49 chr1:153901600-153916200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
50 chr1:153901600-153916200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --

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Last update: Aug 31, 2015