The 2.0 version of rSNPBase

Variant report

Variant rs34805562
Chromosome Location chr1:153839045-153839046
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:108 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:153791800-153845600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
2 chr1:153800800-153850800 Weak transcription A549 lung
3 chr1:153800800-153852800 Weak transcription Fetal Brain Female brain
4 chr1:153800800-153852800 Weak transcription Placenta Placenta
5 chr1:153800800-153852800 Weak transcription Left Ventricle heart
6 chr1:153800800-153853000 Weak transcription Fetal Kidney kidney
7 chr1:153801600-153845800 Weak transcription Lung lung
8 chr1:153806200-153845400 Weak transcription Brain Inferior Temporal Lobe brain
9 chr1:153814800-153848000 Weak transcription Fetal Heart heart
10 chr1:153814800-153853400 Weak transcription HSMMtube muscle
11 chr1:153816000-153844000 Weak transcription Right Ventricle heart
12 chr1:153821600-153839800 Weak transcription Small Intestine intestine
13 chr1:153822600-153839400 Weak transcription Primary T helper naive cells from peripheral blood blood
14 chr1:153822800-153853400 Weak transcription HMEC breast
15 chr1:153822800-153854200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
16 chr1:153823600-153845400 Weak transcription ES-I3 Cell Line embryonic stem cell
17 chr1:153824000-153843600 Weak transcription Muscle Satellite Cultured Cells --
18 chr1:153825000-153840200 Weak transcription NHEK skin
19 chr1:153825800-153842000 Weak transcription Fetal Intestine Large intestine
20 chr1:153825800-153845800 Weak transcription Esophagus oesophagus
21 chr1:153825800-153852400 Weak transcription Fetal Lung lung
22 chr1:153825800-153853000 Weak transcription Rectal Mucosa Donor 29 rectum
23 chr1:153825800-153853000 Weak transcription Rectal Smooth Muscle rectum
24 chr1:153825800-153853200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
25 chr1:153825800-153853200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
26 chr1:153825800-153887200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
27 chr1:153826000-153845800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
28 chr1:153826000-153848000 Weak transcription K562 blood
29 chr1:153826000-153853200 Weak transcription Fetal Muscle Trunk muscle
30 chr1:153826000-153853400 Weak transcription Stomach Smooth Muscle stomach
31 chr1:153826200-153852800 Weak transcription Rectal Mucosa Donor 31 rectum
32 chr1:153826200-153853200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
33 chr1:153827200-153843200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
34 chr1:153828800-153852800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
35 chr1:153830200-153863600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
36 chr1:153830400-153841200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
37 chr1:153830400-153841800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
38 chr1:153830400-153842000 Weak transcription Primary hematopoietic stem cells blood
39 chr1:153830600-153841800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
40 chr1:153830800-153845600 Weak transcription ES-WA7 Cell Line embryonic stem cell
41 chr1:153831600-153842000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
42 chr1:153831600-153844000 Weak transcription Primary monocytes fromperipheralblood blood
43 chr1:153831800-153841800 Weak transcription Cortex derived primary cultured neurospheres brain
44 chr1:153831800-153842000 Weak transcription Primary B cells from cord blood blood
45 chr1:153831800-153853000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
46 chr1:153832000-153841400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
47 chr1:153833000-153841800 Weak transcription Breast Myoepithelial Primary Cells Breast
48 chr1:153833200-153845800 Weak transcription Fetal Adrenal Gland Adrenal Gland
49 chr1:153833400-153839400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
50 chr1:153833400-153839400 Weak transcription Spleen Spleen

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Last update: Aug 31, 2015