The 2.0 version of rSNPBase

Variant report

Variant rs12041920
Chromosome Location chr1:153851106-153851107
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:105 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:153800800-153852800 Weak transcription Fetal Brain Female brain
2 chr1:153800800-153852800 Weak transcription Placenta Placenta
3 chr1:153800800-153852800 Weak transcription Left Ventricle heart
4 chr1:153800800-153853000 Weak transcription Fetal Kidney kidney
5 chr1:153814800-153853400 Weak transcription HSMMtube muscle
6 chr1:153822800-153853400 Weak transcription HMEC breast
7 chr1:153822800-153854200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
8 chr1:153825800-153852400 Weak transcription Fetal Lung lung
9 chr1:153825800-153853000 Weak transcription Rectal Mucosa Donor 29 rectum
10 chr1:153825800-153853000 Weak transcription Rectal Smooth Muscle rectum
11 chr1:153825800-153853200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
12 chr1:153825800-153853200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
13 chr1:153825800-153887200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
14 chr1:153826000-153853200 Weak transcription Fetal Muscle Trunk muscle
15 chr1:153826000-153853400 Weak transcription Stomach Smooth Muscle stomach
16 chr1:153826200-153852800 Weak transcription Rectal Mucosa Donor 31 rectum
17 chr1:153826200-153853200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
18 chr1:153828800-153852800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
19 chr1:153830200-153863600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
20 chr1:153831800-153853000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
21 chr1:153833400-153854400 Weak transcription Gastric stomach
22 chr1:153833600-153853600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
23 chr1:153837000-153893000 Weak transcription H9 Cell Line embryonic stem cell
24 chr1:153837200-153853400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
25 chr1:153839200-153852200 Weak transcription Pancreatic Islets Pancreatic Islet
26 chr1:153839200-153853000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
27 chr1:153839200-153853000 Weak transcription Adipose Nuclei Adipose
28 chr1:153839200-153853000 Weak transcription Colon Smooth Muscle Colon
29 chr1:153839200-153853000 Weak transcription Duodenum Smooth Muscle Duodenum
30 chr1:153839200-153853400 Weak transcription NHDF-Ad bronchial
31 chr1:153839800-153853000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
32 chr1:153839800-153853400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
33 chr1:153839800-153853400 Weak transcription Duodenum Mucosa Duodenum
34 chr1:153840000-153853400 Weak transcription Liver Liver
35 chr1:153842200-153852000 Weak transcription Brain Germinal Matrix brain
36 chr1:153842200-153853600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
37 chr1:153842400-153852800 Weak transcription Primary B cells from peripheral blood blood
38 chr1:153842400-153853000 Weak transcription GM12878-XiMat blood
39 chr1:153842400-153859400 Weak transcription Hela-S3 cervix
40 chr1:153842600-153853200 Weak transcription Breast Myoepithelial Primary Cells Breast
41 chr1:153842600-153853200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
42 chr1:153842600-153862400 Weak transcription Primary neutrophils fromperipheralblood blood
43 chr1:153842800-153852800 Weak transcription Primary hematopoietic stem cells blood
44 chr1:153842800-153853000 Weak transcription Fetal Intestine Large intestine
45 chr1:153842800-153853400 Weak transcription HSMM muscle
46 chr1:153842800-153862800 Weak transcription Thymus Thymus
47 chr1:153845400-153852200 Weak transcription Fetal Brain Male brain
48 chr1:153845600-153852800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
49 chr1:153845600-153853000 Weak transcription HUVEC blood vessel
50 chr1:153846000-153852200 Weak transcription Primary T helper naive cells from peripheral blood blood

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Last update: Aug 31, 2015