Variant report

Variant	rs11586701
Chromosome Location	chr1:154055592-154055593
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:154054884..154056832-chr1:154065709..154068314,2	MCF-7	breast:

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10127983	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs10559	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs10796986	0.89[ASN][1000 genomes]
rs10908557	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs10908558	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs10908627	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs1110165	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs11264532	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs11264680	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs11264743	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs11264865	0.89[ASN][1000 genomes]
rs11264866	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs11264871	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11264873	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11264875	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11264886	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11264895	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11264964	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11264974	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11265036	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11265040	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11265049	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11265076	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11265082	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11265099	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11581644	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs11589857	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs12021641	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12022158	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs12022730	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs12028398	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs12032914	0.88[CHB][hapmap];0.94[JPT][hapmap]
rs12033835	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs12042562	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs12048137	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12049128	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12401565	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs12403956	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs12408260	0.89[ASN][1000 genomes]
rs12564669	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1572788	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs34612917	1.00[YRI][hapmap]
rs3748848	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs3791187	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs4845357	0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4845583	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs58300038	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61542760	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6427457	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6670019	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6672856	0.85[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6679907	0.89[ASN][1000 genomes]
rs6680140	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs6701341	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6703545	0.89[ASN][1000 genomes]
rs7521303	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs7537691	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs7544502	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7547663	0.84[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap]
rs7551128	1.00[YRI][hapmap]
rs7552737	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8450	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs946682	0.88[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999364	chr1:153622634-154419436	Strong transcription Genic enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	286 gene(s)	inside rSNPs	diseases
2	nsv535175	chr1:153622634-154419436	Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	286 gene(s)	inside rSNPs	diseases
3	nsv532551	chr1:153732039-154192279	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	233 gene(s)	inside rSNPs	diseases
4	esv1830240	chr1:153885261-154370938	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	239 gene(s)	inside rSNPs	diseases
5	nsv948413	chr1:153974621-154797272	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
6	nsv1000402	chr1:153991106-154527053	Strong transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	106 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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