Variant report

Variant	rs11265420
Chromosome Location	chr1:160492549-160492550
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11265427	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11265429	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11265430	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11265435	1.00[AMR][1000 genomes]
rs11486168	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12062138	1.00[AMR][1000 genomes]
rs12062516	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12064709	1.00[AMR][1000 genomes]
rs12072092	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12078173	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12080400	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12081008	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12093289	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12097429	1.00[AMR][1000 genomes]
rs56027103	1.00[AMR][1000 genomes]
rs56934040	1.00[AMR][1000 genomes]
rs61702023	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829614	chr1:160465291-160595000	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv872491	chr1:160470258-160580549	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:160488600-160493000	Enhancers	Primary hematopoietic stem cells	blood
2	chr1:160489000-160492600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
3	chr1:160489200-160492800	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr1:160489200-160493400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
5	chr1:160489400-160493200	Flanking Active TSS	Primary B cells from cord blood	blood
6	chr1:160489800-160492600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
7	chr1:160489800-160492600	Enhancers	K562	blood
8	chr1:160490000-160493000	Active TSS	Rectal Mucosa Donor 29	rectum
9	chr1:160490000-160493200	Flanking Active TSS	Fetal Thymus	thymus
10	chr1:160490200-160492600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr1:160490200-160492600	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr1:160490200-160493000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr1:160490200-160493000	Active TSS	Duodenum Mucosa	Duodenum
14	chr1:160490400-160493200	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
15	chr1:160490600-160493000	Flanking Active TSS	Thymus	Thymus
16	chr1:160490600-160493200	Active TSS	GM12878-XiMat	blood
17	chr1:160491000-160493000	Active TSS	Sigmoid Colon	Sigmoid Colon
18	chr1:160491200-160493200	Active TSS	Primary T cells fromperipheralblood	blood
19	chr1:160491600-160493200	Active TSS	Primary B cells from peripheral blood	blood
20	chr1:160491600-160493200	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
21	chr1:160491800-160493000	Active TSS	Primary T helper naive cells from peripheral blood	blood
22	chr1:160491800-160493000	Active TSS	Primary T killer memory cells from peripheral blood	blood
23	chr1:160491800-160493000	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
24	chr1:160491800-160493000	Active TSS	Rectal Smooth Muscle	rectum
25	chr1:160492000-160493000	Active TSS	Primary T killer naive cells fromperipheralblood	blood
26	chr1:160492200-160493000	Active TSS	Adipose Nuclei	Adipose
27	chr1:160492200-160493000	Active TSS	Esophagus	oesophagus
28	chr1:160492200-160493000	Active TSS	Small Intestine	intestine
29	chr1:160492400-160492600	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
30	chr1:160492400-160492600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
31	chr1:160492400-160492800	Active TSS	Primary T cells from cord blood	blood
32	chr1:160492400-160492800	Active TSS	Primary T regulatory cells fromperipheralblood	blood
33	chr1:160492400-160493200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr1:160492400-160493200	Enhancers	Dnd41	blood

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