Variant report

Variant	rs12064709
Chromosome Location	chr1:160484802-160484803
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11265420	1.00[AMR][1000 genomes]
rs11265427	1.00[AMR][1000 genomes]
rs11265429	1.00[AMR][1000 genomes]
rs11265430	1.00[AMR][1000 genomes]
rs11265435	1.00[AMR][1000 genomes]
rs11486168	1.00[AMR][1000 genomes]
rs12062138	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12062516	1.00[AMR][1000 genomes]
rs12072092	1.00[AMR][1000 genomes]
rs12078173	1.00[AMR][1000 genomes]
rs12080400	1.00[AMR][1000 genomes]
rs12081008	1.00[AMR][1000 genomes]
rs12093289	1.00[AMR][1000 genomes]
rs12097429	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56027103	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56934040	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61702023	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829614	chr1:160465291-160595000	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv872491	chr1:160470258-160580549	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:160473800-160485800	Weak transcription	Thymus	Thymus
2	chr1:160482200-160489200	Weak transcription	Fetal Thymus	thymus
3	chr1:160482400-160485200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr1:160482400-160485600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr1:160482600-160489200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr1:160482800-160488800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr1:160483600-160485000	ZNF genes & repeats	Primary B cells from peripheral blood	blood
8	chr1:160483600-160489000	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr1:160484000-160489200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr1:160484600-160485000	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr1:160484600-160485200	Weak transcription	Primary T cells from cord blood	blood
12	chr1:160484600-160485200	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr1:160484600-160485400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr1:160484800-160485800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr1:160484800-160489000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
16	chr1:160484800-160489200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr1:160484800-160489200	Enhancers	Primary T killer memory cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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