Variant report

Variant	rs12062138
Chromosome Location	chr1:160477746-160477747
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11265420	1.00[AMR][1000 genomes]
rs11265427	1.00[AMR][1000 genomes]
rs11265429	1.00[AMR][1000 genomes]
rs11265430	1.00[AMR][1000 genomes]
rs11265435	1.00[AMR][1000 genomes]
rs11486168	1.00[AMR][1000 genomes]
rs12062516	1.00[AMR][1000 genomes]
rs12064709	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12072092	1.00[AMR][1000 genomes]
rs12078173	1.00[AMR][1000 genomes]
rs12080400	1.00[AMR][1000 genomes]
rs12081008	1.00[AMR][1000 genomes]
rs12093289	1.00[AMR][1000 genomes]
rs12097429	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56027103	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56934040	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61702023	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829614	chr1:160465291-160595000	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv872491	chr1:160470258-160580549	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:160473800-160485800	Weak transcription	Thymus	Thymus
2	chr1:160474600-160480000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr1:160475200-160477800	ZNF genes & repeats	Primary B cells from peripheral blood	blood
4	chr1:160475600-160477800	ZNF genes & repeats	Primary B cells from cord blood	blood
5	chr1:160475800-160477800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
6	chr1:160475800-160477800	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
7	chr1:160476600-160481000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr1:160476800-160480000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr1:160477400-160478200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr1:160477400-160479400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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