Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1061217	0.81[ASN][1000 genomes]
rs10752638	0.81[ASN][1000 genomes]
rs10797083	0.82[ASN][1000 genomes]
rs10908789	0.85[ASN][1000 genomes]
rs10908792	0.92[ASN][1000 genomes]
rs10908794	0.82[ASN][1000 genomes]
rs10908796	0.81[ASN][1000 genomes]
rs11265442	0.86[ASN][1000 genomes]
rs11265444	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11265449	0.81[EUR][1000 genomes]
rs12402879	0.83[ASN][1000 genomes]
rs12736781	0.85[ASN][1000 genomes]
rs1394079	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1572382	0.82[ASN][1000 genomes]
rs1604783	0.82[ASN][1000 genomes]
rs6427535	0.81[ASN][1000 genomes]
rs6668760	0.83[ASN][1000 genomes]
rs6692382	0.83[ASN][1000 genomes]
rs7526815	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7534679	0.86[ASN][1000 genomes]
rs977019	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829614	chr1:160465291-160595000	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv872491	chr1:160470258-160580549	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv831703	chr1:160496124-160643024	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	esv1822379	chr1:160545332-160831143	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11265443	CD84	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:160555600-160575200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr1:160558000-160575400	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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