Variant report

Variant	rs10908789
Chromosome Location	chr1:160556547-160556548
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:160555941..160557860-chr1:160560881..160563752,2	K562	blood:
2	chr1:160555941..160557900-chr1:160560881..160563752,3	K562	blood:
3	chr1:160554315..160557129-chr1:160558111..160560745,4	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1061217	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10752638	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10797083	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10908792	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10908794	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10908796	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11265442	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11265443	0.85[ASN][1000 genomes]
rs11265444	0.95[ASN][1000 genomes]
rs11265449	0.84[ASN][1000 genomes]
rs11265451	0.82[ASN][1000 genomes]
rs1138323	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12048466	0.82[ASN][1000 genomes]
rs12144628	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12402879	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12728784	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12736781	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1394079	0.90[ASN][1000 genomes]
rs1572382	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1604783	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1998651	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2089088	0.82[ASN][1000 genomes]
rs2099604	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2102225	0.82[ASN][1000 genomes]
rs2102226	0.82[ASN][1000 genomes]
rs2369725	0.82[ASN][1000 genomes]
rs2369726	0.82[ASN][1000 genomes]
rs349249	0.87[ASN][1000 genomes]
rs3816146	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6427535	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6656191	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6668760	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6692382	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7521247	0.88[AFR][1000 genomes]
rs7526815	0.91[ASN][1000 genomes]
rs7528976	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7534679	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs927202	0.82[ASN][1000 genomes]
rs977019	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829614	chr1:160465291-160595000	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv872491	chr1:160470258-160580549	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv831703	chr1:160496124-160643024	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	esv1822379	chr1:160545332-160831143	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10908789	CD84	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:160551200-160558400	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr1:160551600-160557400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr1:160551600-160558600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr1:160555000-160560400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr1:160555200-160556600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr1:160555200-160559000	Weak transcription	GM12878-XiMat	blood
7	chr1:160555600-160557800	Weak transcription	Liver	Liver
8	chr1:160555600-160575200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr1:160556000-160557400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr1:160556000-160560400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr1:160556200-160560400	Weak transcription	Primary T helper cells PMA-I stimulated	--

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