Variant report

Variant	rs11265486
Chromosome Location	chr1:160769123-160769124
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLAMF7-7	chr1:160768616-160769454	NONHSAT007076

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11265476	1.00[AMR][1000 genomes]
rs12072093	1.00[AMR][1000 genomes]
rs12077897	1.00[AMR][1000 genomes]
rs2077485	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs473433	1.00[AMR][1000 genomes]
rs474034	1.00[AMR][1000 genomes]
rs488955	1.00[AMR][1000 genomes]
rs529608	0.83[AMR][1000 genomes]
rs529878	1.00[AMR][1000 genomes]
rs534500	1.00[AMR][1000 genomes]
rs549626	1.00[AMR][1000 genomes]
rs577260	0.83[AMR][1000 genomes]
rs580429	1.00[AMR][1000 genomes]
rs74124280	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74124282	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs911227	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1822379	chr1:160545332-160831143	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831714	chr1:160581168-160776809	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv464161	chr1:160747615-160852046	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv548057	chr1:160747615-160852046	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:160765400-160772200	Enhancers	Dnd41	blood
2	chr1:160765800-160769200	Flanking Active TSS	Fetal Thymus	thymus
3	chr1:160766200-160771400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
4	chr1:160766800-160771400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
5	chr1:160767800-160769400	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr1:160768000-160769600	Flanking Active TSS	Primary T cells from cord blood	blood
7	chr1:160768000-160769800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
8	chr1:160768000-160769800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
9	chr1:160768000-160769800	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
10	chr1:160768000-160770000	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
11	chr1:160768000-160771200	Transcr. at gene 5' and 3'	Primary T cells fromperipheralblood	blood
12	chr1:160768000-160771600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
13	chr1:160768200-160770400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr1:160768200-160770400	Enhancers	Duodenum Mucosa	Duodenum
15	chr1:160768400-160769400	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr1:160768400-160770400	Enhancers	GM12878-XiMat	blood
17	chr1:160768400-160770800	Transcr. at gene 5' and 3'	Primary B cells from cord blood	blood
18	chr1:160768600-160770600	Active TSS	Thymus	Thymus
19	chr1:160768600-160771000	Transcr. at gene 5' and 3'	Primary T regulatory cells fromperipheralblood	blood
20	chr1:160768600-160774000	Genic enhancers	Primary B cells from peripheral blood	blood
21	chr1:160768800-160769200	Transcr. at gene 5' and 3'	Primary T helper memory cells from peripheral blood 1	blood
22	chr1:160768800-160770400	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
23	chr1:160768800-160772600	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr1:160769000-160769200	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
25	chr1:160769000-160770000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
26	chr1:160769000-160771600	Weak transcription	Spleen	Spleen

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links