Variant report

Variant	rs529878
Chromosome Location	chr1:160738342-160738343
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11265476	1.00[AMR][1000 genomes]
rs11265486	1.00[AMR][1000 genomes]
rs12072093	1.00[AMR][1000 genomes]
rs12077897	1.00[AMR][1000 genomes]
rs2077485	1.00[AMR][1000 genomes]
rs473433	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs474034	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs488955	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs529608	0.83[AMR][1000 genomes]
rs534500	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs549626	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs577260	0.83[AMR][1000 genomes]
rs580429	1.00[AMR][1000 genomes]
rs74124280	1.00[AMR][1000 genomes]
rs74124282	1.00[AMR][1000 genomes]
rs911227	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1822379	chr1:160545332-160831143	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831714	chr1:160581168-160776809	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv428532	chr1:160671125-160767708	Flanking Active TSS Enhancers Genic enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:160736600-160738400	Enhancers	Fetal Thymus	thymus
2	chr1:160736800-160738400	Flanking Active TSS	GM12878-XiMat	blood
3	chr1:160736800-160740000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr1:160737200-160738400	Flanking Active TSS	NHEK	skin
5	chr1:160737400-160738400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
6	chr1:160737600-160738400	Enhancers	Ovary	ovary
7	chr1:160737800-160738400	Enhancers	Lung	lung
8	chr1:160737800-160738600	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr1:160738200-160738400	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
10	chr1:160738200-160738400	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr1:160738200-160738400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr1:160738200-160738600	Enhancers	Primary B cells from peripheral blood	blood
13	chr1:160738200-160738600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr1:160738200-160738600	Enhancers	Dnd41	blood
15	chr1:160738200-160738600	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr1:160738200-160745200	Weak transcription	Primary B cells from cord blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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