Variant report

Variant	rs580429
Chromosome Location	chr1:160736421-160736422
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11265476	1.00[AMR][1000 genomes]
rs11265486	1.00[AMR][1000 genomes]
rs12072093	1.00[AMR][1000 genomes]
rs12077897	1.00[AMR][1000 genomes]
rs2077485	1.00[AMR][1000 genomes]
rs473433	1.00[AMR][1000 genomes]
rs474034	1.00[AMR][1000 genomes]
rs488955	1.00[AMR][1000 genomes]
rs529608	0.83[AMR][1000 genomes]
rs529878	1.00[AMR][1000 genomes]
rs534500	1.00[AMR][1000 genomes]
rs549626	1.00[AMR][1000 genomes]
rs577260	0.83[AMR][1000 genomes]
rs74124280	1.00[AMR][1000 genomes]
rs74124282	1.00[AMR][1000 genomes]
rs911227	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1822379	chr1:160545332-160831143	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831714	chr1:160581168-160776809	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv428532	chr1:160671125-160767708	Flanking Active TSS Enhancers Genic enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:160731400-160736600	Weak transcription	Esophagus	oesophagus
2	chr1:160732200-160737200	Weak transcription	HMEC	breast
3	chr1:160732400-160736600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:160732400-160736600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr1:160733800-160736600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr1:160736400-160736800	Enhancers	GM12878-XiMat	blood
7	chr1:160736400-160737200	Enhancers	NHEK	skin
8	chr1:160736400-160737400	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr1:160736400-160737600	Enhancers	Primary T cells fromperipheralblood	blood
10	chr1:160736400-160737600	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr1:160736400-160737600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr1:160736400-160737600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr1:160736400-160737600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chr1:160736400-160737600	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr1:160736400-160737600	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr1:160736400-160737600	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr1:160736400-160737800	Enhancers	Primary T cells from cord blood	blood
18	chr1:160736400-160737800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr1:160736400-160737800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
20	chr1:160736400-160737800	Enhancers	Dnd41	blood
21	chr1:160736400-160738200	Enhancers	Primary monocytes fromperipheralblood	blood

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