Variant report

Variant	rs1128327
Chromosome Location	chr19:37988288-37988289
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:9)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:37987631..37989871-chr19:37996181..37998149,2	MCF-7	breast:

(count:9 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF569-5	chr19:37988063-37988494	ENSG00000266916.1
2	lnc-ZNF569-5	chr19:37988066-37988494	ENSG00000266916.1
3	lnc-ZNF569-5	chr19:37988078-37988494	NONHSAT066116
4	lnc-ZNF569-5	chr19:37988078-37988494	NONHSAT066117
5	lnc-ZNF569-5	chr19:37988200-37988494	NONHSAT066118
6	lnc-ZNF569-5	chr19:37988200-37988494	NONHSAT066119
7	lnc-ZNF569-5	chr19:37988259-37988494	ENSG00000266916.1
8	lnc-ZNF569-5	chr19:37988265-37988494	ENSG00000266916.1
9	lnc-ZNF569-5	chr19:37988250-37988494	NONHSAT066121

No data

Variant related genes	Relation type
ENSG00000188227	Chromatin interaction
ENSG00000266916	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11083427	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11083428	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11083430	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11666662	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11666738	0.90[JPT][hapmap]
rs12151218	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12151280	0.90[JPT][hapmap]
rs12162238	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12459013	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12459975	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12460230	0.90[JPT][hapmap]
rs12461941	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12462271	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12462505	1.00[JPT][hapmap]
rs12462524	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12986074	1.00[JPT][hapmap];0.85[YRI][hapmap]
rs12986146	0.90[JPT][hapmap]
rs17243355	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17303301	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2279150	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2290999	0.90[JPT][hapmap]
rs35014847	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35205379	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3745764	1.00[JPT][hapmap]
rs3826849	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs7248397	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv2757695	chr19:37794850-38051606	Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	esv2758759	chr19:37794850-38051606	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv833819	chr19:37899501-38051599	ZNF genes & repeats Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv1056753	chr19:37963714-38015943	Weak transcription Active TSS Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv579468	chr19:37977609-38293487	ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37984800-37996400	Weak transcription	Fetal Heart	heart
2	chr19:37988200-37988600	ZNF genes & repeats	Fetal Brain Male	brain
3	chr19:37988200-37988800	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
4	chr19:37988200-37989000	ZNF genes & repeats	Brain Cingulate Gyrus	brain
5	chr19:37988200-37989000	ZNF genes & repeats	Brain Substantia Nigra	brain
6	chr19:37988200-37989000	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
7	chr19:37988200-37989200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr19:37988200-37989200	ZNF genes & repeats	Adipose Nuclei	Adipose
9	chr19:37988200-37989200	ZNF genes & repeats	Liver	Liver
10	chr19:37988200-37989200	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
11	chr19:37988200-37989200	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain

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