Variant report

Variant	rs35014847
Chromosome Location	chr19:38011353-38011354
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1128327	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12151218	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12459975	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12461941	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12462271	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12462524	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17243355	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17303301	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2279150	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73031321	0.81[ASN][1000 genomes]
rs73031322	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv2757695	chr19:37794850-38051606	Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	esv2758759	chr19:37794850-38051606	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv833819	chr19:37899501-38051599	ZNF genes & repeats Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv1056753	chr19:37963714-38015943	Weak transcription Active TSS Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv579468	chr19:37977609-38293487	ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37998800-38014000	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr19:37998800-38021000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr19:37998800-38022600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr19:37999000-38011400	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr19:37999000-38013800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr19:37999000-38028800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr19:37999200-38018400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr19:37999800-38012800	Strong transcription	HUES64 Cell Line	embryonic stem cell
9	chr19:38002000-38028800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
10	chr19:38004800-38013400	Weak transcription	Primary B cells from peripheral blood	blood
11	chr19:38004800-38013400	Weak transcription	Placenta	Placenta
12	chr19:38005600-38011600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr19:38006000-38020800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr19:38006800-38011600	Strong transcription	Brain Inferior Temporal Lobe	brain
15	chr19:38007400-38013600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr19:38008800-38026600	Weak transcription	Fetal Heart	heart
17	chr19:38009000-38013400	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr19:38009000-38013400	Weak transcription	Fetal Kidney	kidney
19	chr19:38009400-38020000	ZNF genes & repeats	Fetal Intestine Small	intestine
20	chr19:38009800-38013400	Weak transcription	Psoas Muscle	Psoas
21	chr19:38010400-38011600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr19:38010600-38011800	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
23	chr19:38010600-38011800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
24	chr19:38010600-38011800	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr19:38010600-38011800	Strong transcription	Cortex derived primary cultured neurospheres	brain
26	chr19:38010600-38011800	ZNF genes & repeats	Rectal Smooth Muscle	rectum
27	chr19:38010600-38011800	ZNF genes & repeats	NHEK	skin
28	chr19:38010600-38013400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr19:38010600-38018400	Strong transcription	Fetal Brain Female	brain
30	chr19:38010600-38020600	Strong transcription	Fetal Muscle Leg	muscle
31	chr19:38010800-38011400	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr19:38010800-38011600	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr19:38010800-38011600	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr19:38010800-38011600	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr19:38010800-38011600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
36	chr19:38010800-38011600	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
37	chr19:38010800-38011600	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr19:38010800-38011600	Strong transcription	Brain Substantia Nigra	brain
39	chr19:38010800-38011600	ZNF genes & repeats	Left Ventricle	heart
40	chr19:38010800-38011800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr19:38010800-38011800	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr19:38010800-38011800	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
43	chr19:38010800-38011800	ZNF genes & repeats	Adipose Nuclei	Adipose
44	chr19:38010800-38011800	ZNF genes & repeats	Aorta	Aorta
45	chr19:38010800-38011800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
46	chr19:38010800-38011800	ZNF genes & repeats	Fetal Intestine Large	intestine
47	chr19:38010800-38011800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
48	chr19:38010800-38011800	ZNF genes & repeats	Ovary	ovary
49	chr19:38010800-38011800	ZNF genes & repeats	Pancreas	Pancrea
50	chr19:38010800-38011800	Strong transcription	Right Ventricle	heart

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