Variant report

Variant	rs1133184
Chromosome Location	chr8:10226560-10226561
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11249995	0.87[JPT][hapmap];0.90[ASN][1000 genomes]
rs11249996	0.90[CHD][hapmap];0.87[JPT][hapmap];0.88[ASN][1000 genomes]
rs11249999	0.82[TSI][hapmap]
rs12543645	0.93[CHD][hapmap];0.87[JPT][hapmap];0.82[TSI][hapmap];0.85[ASN][1000 genomes]
rs17151824	0.88[CHD][hapmap]
rs3088186	0.80[CEU][hapmap];0.81[GIH][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34155841	0.84[ASN][1000 genomes]
rs35406700	0.86[ASN][1000 genomes]
rs35472251	0.86[ASN][1000 genomes]
rs35840352	0.89[ASN][1000 genomes]
rs6601449	0.88[CHB][hapmap]
rs6984231	0.88[CHB][hapmap];0.91[CHD][hapmap]
rs7015455	0.82[CHB][hapmap];0.82[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030934	chr8:10065169-10561161	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv890347	chr8:10153082-10331636	Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1022994	chr8:10190618-10660122	Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv539466	chr8:10190618-10660122	Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv527326	chr8:10199548-10320019	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv1025557	chr8:10216726-10555187	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs1133184	C8orf5	Cis_1M	lymphoblastoid	RTeQTL
rs1133184	RP1L1	cis	cerebellum	SCAN
rs1133184	CLDN23	cis	multi-tissue	Pritchard
rs1133184	MFHAS1	cis	cerebellum	SCAN
rs1133184	LOC100129129	cis	brain	BrainEAC
rs1133184	BLK	Cis_chr	lymphoblastoid	RTeQTL
rs1133184	MSRA	cis	parietal	SCAN

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10192600-10282400	Weak transcription	Gastric	stomach
2	chr8:10193000-10235000	Weak transcription	Pancreas	Pancrea
3	chr8:10196800-10228000	Weak transcription	Liver	Liver
4	chr8:10220400-10226600	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr8:10220800-10228000	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr8:10221000-10235200	Weak transcription	Right Ventricle	heart
7	chr8:10221200-10228200	Weak transcription	Fetal Intestine Small	intestine
8	chr8:10221200-10229200	Weak transcription	Brain Angular Gyrus	brain
9	chr8:10222200-10227000	Enhancers	HSMM	muscle
10	chr8:10222200-10230000	Weak transcription	Primary T cells from cord blood	blood
11	chr8:10222600-10227400	Weak transcription	Duodenum Mucosa	Duodenum
12	chr8:10223600-10228000	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr8:10223600-10231400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr8:10223800-10227600	Weak transcription	NHDF-Ad	bronchial
15	chr8:10223800-10227800	Weak transcription	Right Atrium	heart
16	chr8:10223800-10229400	Enhancers	HSMMtube	muscle
17	chr8:10223800-10235400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr8:10224000-10228800	Weak transcription	Left Ventricle	heart
19	chr8:10224000-10255800	Weak transcription	Stomach Smooth Muscle	stomach
20	chr8:10224200-10228000	Weak transcription	Brain Anterior Caudate	brain
21	chr8:10224200-10228800	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr8:10224200-10231000	Weak transcription	Spleen	Spleen
23	chr8:10224400-10227400	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr8:10224400-10235200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr8:10224600-10229000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr8:10224600-10229600	Weak transcription	Fetal Muscle Leg	muscle
27	chr8:10224800-10226600	Enhancers	Placenta Amnion	Placenta Amnion
28	chr8:10225800-10233600	Weak transcription	Primary B cells from cord blood	blood
29	chr8:10226000-10226600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr8:10226000-10226600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr8:10226000-10226600	Enhancers	Brain Hippocampus Middle	brain
32	chr8:10226000-10226600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
33	chr8:10226200-10226600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr8:10226200-10228000	Weak transcription	NH-A	brain
35	chr8:10226200-10233000	Weak transcription	Fetal Brain Female	brain
36	chr8:10226400-10226600	Enhancers	Brain Cingulate Gyrus	brain
37	chr8:10226400-10228200	Weak transcription	HMEC	breast
38	chr8:10226400-10228800	Weak transcription	Fetal Brain Male	brain
39	chr8:10226400-10229200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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