Variant report

Variant	rs17151824
Chromosome Location	chr8:10220870-10220871
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:10215726..10218091-chr8:10220767..10222352,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11249993	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11249994	0.91[CHD][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs1133184	0.88[CHD][hapmap]
rs11989029	0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs11997177	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12543645	0.82[CHD][hapmap]
rs13272232	0.89[JPT][hapmap];0.89[ASN][1000 genomes]
rs17151892	0.88[GIH][hapmap]
rs17151903	0.88[GIH][hapmap]
rs1986677	0.91[GIH][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs60937041	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6601447	0.98[GIH][hapmap];0.84[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6601449	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6984231	0.97[CHD][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs6997515	0.85[ASN][1000 genomes]
rs7015455	0.94[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7842443	0.83[MEX][hapmap]
rs9657539	0.86[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030934	chr8:10065169-10561161	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv1016347	chr8:10091475-10223667	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv890347	chr8:10153082-10331636	Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv1022994	chr8:10190618-10660122	Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv539466	chr8:10190618-10660122	Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
6	nsv527326	chr8:10199548-10320019	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
7	nsv1018940	chr8:10200886-10220973	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1025557	chr8:10216726-10555187	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10192600-10282400	Weak transcription	Gastric	stomach
2	chr8:10193000-10235000	Weak transcription	Pancreas	Pancrea
3	chr8:10196800-10228000	Weak transcription	Liver	Liver
4	chr8:10201800-10221800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr8:10204400-10221800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr8:10206200-10222800	Weak transcription	Aorta	Aorta
7	chr8:10217600-10226400	Enhancers	Fetal Brain Male	brain
8	chr8:10218400-10221000	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr8:10218600-10222800	Weak transcription	Brain Anterior Caudate	brain
10	chr8:10218800-10222000	Weak transcription	NHDF-Ad	bronchial
11	chr8:10218800-10223200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr8:10218800-10223400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr8:10219400-10221000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr8:10219400-10222000	Enhancers	Spleen	Spleen
15	chr8:10219400-10224600	Enhancers	Fetal Muscle Leg	muscle
16	chr8:10219600-10221000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr8:10219800-10221200	Enhancers	Stomach Smooth Muscle	stomach
18	chr8:10219800-10221400	Enhancers	NHEK	skin
19	chr8:10219800-10222200	Enhancers	Primary T cells from cord blood	blood
20	chr8:10219800-10223200	Enhancers	Fetal Brain Female	brain
21	chr8:10220000-10221000	Enhancers	Fetal Muscle Trunk	muscle
22	chr8:10220000-10221000	Enhancers	Fetal Thymus	thymus
23	chr8:10220000-10221000	Enhancers	Lung	lung
24	chr8:10220000-10221200	Enhancers	Brain Germinal Matrix	brain
25	chr8:10220000-10221400	Enhancers	Fetal Lung	lung
26	chr8:10220000-10221400	Enhancers	Right Atrium	heart
27	chr8:10220000-10222600	Enhancers	Left Ventricle	heart
28	chr8:10220000-10224400	Enhancers	Placenta Amnion	Placenta Amnion
29	chr8:10220200-10221000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr8:10220200-10221000	Enhancers	Brain Inferior Temporal Lobe	brain
31	chr8:10220200-10221200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr8:10220200-10221200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr8:10220200-10221200	Enhancers	Fetal Intestine Small	intestine
34	chr8:10220200-10221400	Enhancers	Adipose Nuclei	Adipose
35	chr8:10220200-10221400	Enhancers	Esophagus	oesophagus
36	chr8:10220400-10221200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr8:10220400-10221200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr8:10220400-10221400	Enhancers	Fetal Heart	heart
39	chr8:10220400-10221800	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr8:10220400-10226600	Enhancers	Breast Myoepithelial Primary Cells	Breast
41	chr8:10220600-10221000	Enhancers	Right Ventricle	heart
42	chr8:10220600-10221000	Enhancers	Stomach Mucosa	stomach
43	chr8:10220600-10221200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr8:10220600-10221200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr8:10220600-10221200	Enhancers	Brain Angular Gyrus	brain
46	chr8:10220600-10221400	Enhancers	HMEC	breast
47	chr8:10220600-10222000	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr8:10220600-10222200	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr8:10220600-10223000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr8:10220800-10221000	Enhancers	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links