Variant report

Variant	rs1133977
Chromosome Location	chr2:99741984-99741985
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:99741338..99743019-chr2:99755672..99758231,2	MCF-7	breast:
2	chr2:99740335..99742130-chr2:99742168..99744513,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MITD1-2	chr2:99741230-99743639	NONHSAT072733

Variant related genes	Relation type
ENSG00000135951	Chromatin interaction
ENSG00000273045	Chromatin interaction

Extended variants
information (count: 163 )
Associated
traits (count: 19 )

rSNPs within LD-proxies of this variant (count:161)

rs_ID	r²[population]
rs10167390	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10170063	0.90[ASN][1000 genomes]
rs10181344	1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.94[MKK][hapmap];0.82[YRI][hapmap]
rs10181422	0.81[ASN][1000 genomes]
rs1044575	0.84[EUR][1000 genomes]
rs10865029	0.92[CEU][hapmap];0.87[EUR][1000 genomes]
rs11123761	0.92[CEU][hapmap];0.86[GIH][hapmap];0.84[TSI][hapmap];0.86[EUR][1000 genomes]
rs11123762	0.87[EUR][1000 genomes]
rs11123763	0.87[EUR][1000 genomes]
rs11123764	0.87[EUR][1000 genomes]
rs11123765	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs11123766	0.84[EUR][1000 genomes]
rs11123770	0.94[EUR][1000 genomes]
rs1115756	0.80[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs1115757	0.83[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs1133978	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11674894	0.96[CEU][hapmap];0.91[EUR][1000 genomes]
rs11677247	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs11678456	0.86[EUR][1000 genomes]
rs11683107	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11683188	0.83[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.98[TSI][hapmap];0.82[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11685759	0.90[EUR][1000 genomes]
rs11688004	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11689265	0.92[CEU][hapmap];0.93[GIH][hapmap];0.83[MKK][hapmap];0.93[TSI][hapmap];0.89[EUR][1000 genomes]
rs11692336	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11692669	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11692699	0.92[CEU][hapmap];0.86[GIH][hapmap];0.84[TSI][hapmap];0.87[EUR][1000 genomes]
rs11693427	0.83[EUR][1000 genomes]
rs11695379	0.92[CEU][hapmap];0.86[GIH][hapmap];0.86[TSI][hapmap];0.87[EUR][1000 genomes]
rs11695751	0.92[CEU][hapmap];0.93[GIH][hapmap];0.90[TSI][hapmap];0.92[EUR][1000 genomes]
rs11883676	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs11890338	0.85[EUR][1000 genomes]
rs11895749	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11900670	0.87[EUR][1000 genomes]
rs11903311	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12470471	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.94[MKK][hapmap];0.82[YRI][hapmap];0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12613624	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.98[TSI][hapmap];0.82[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12619780	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12621007	0.89[EUR][1000 genomes]
rs12987548	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12991189	0.89[EUR][1000 genomes]
rs12992218	0.85[EUR][1000 genomes]
rs12992930	0.84[EUR][1000 genomes]
rs12995473	0.91[CEU][hapmap];0.85[EUR][1000 genomes]
rs12999417	0.88[CEU][hapmap];0.91[GIH][hapmap];0.83[TSI][hapmap];0.81[EUR][1000 genomes]
rs13000731	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13004491	0.84[EUR][1000 genomes]
rs13008171	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13008496	0.91[CEU][hapmap]
rs13009147	0.90[CEU][hapmap];0.82[EUR][1000 genomes]
rs13012481	0.84[EUR][1000 genomes]
rs13018891	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs13020339	0.82[EUR][1000 genomes]
rs13022329	0.87[EUR][1000 genomes]
rs13023501	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13023744	0.92[EUR][1000 genomes]
rs13026928	0.85[EUR][1000 genomes]
rs13030961	0.92[CEU][hapmap];0.89[EUR][1000 genomes]
rs13031919	0.88[EUR][1000 genomes]
rs13033012	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13035311	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs13035357	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13407840	0.82[ASN][1000 genomes]
rs13798	0.91[CEU][hapmap];0.86[GIH][hapmap];0.86[TSI][hapmap];0.84[EUR][1000 genomes]
rs1453563	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1453564	0.81[ASN][1000 genomes]
rs1563106	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1563107	0.83[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.96[MKK][hapmap];0.82[YRI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1563108	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.92[MKK][hapmap];0.91[YRI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs17708262	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17759607	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2084988	1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs2123686	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs2171359	0.92[CEU][hapmap];0.86[GIH][hapmap];0.86[TSI][hapmap];0.84[EUR][1000 genomes]
rs2171362	0.81[EUR][1000 genomes]
rs2309581	0.92[CEU][hapmap];0.84[GIH][hapmap];0.86[TSI][hapmap];0.84[EUR][1000 genomes]
rs2516827	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs2516828	0.85[EUR][1000 genomes]
rs2516829	0.83[CEU][hapmap];0.86[GIH][hapmap];0.86[TSI][hapmap];0.85[EUR][1000 genomes]
rs2516830	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2516832	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs2516833	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2516834	0.91[CEU][hapmap];0.88[EUR][1000 genomes]
rs2516835	0.83[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2516836	0.83[EUR][1000 genomes]
rs2632260	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs2632261	0.85[EUR][1000 genomes]
rs2632277	0.91[CEU][hapmap];0.83[MKK][hapmap];0.93[TSI][hapmap];0.91[EUR][1000 genomes]
rs2632283	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2632284	0.88[EUR][1000 genomes]
rs28648058	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2964969	0.84[EUR][1000 genomes]
rs2969379	0.91[EUR][1000 genomes]
rs34252185	0.92[EUR][1000 genomes]
rs34272114	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34766932	0.85[EUR][1000 genomes]
rs36071868	0.92[EUR][1000 genomes]
rs4340581	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs4347885	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4374423	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs4402818	0.86[EUR][1000 genomes]
rs4588238	0.92[CEU][hapmap];0.86[GIH][hapmap];0.86[TSI][hapmap];0.86[EUR][1000 genomes]
rs4850897	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4851183	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.87[ASN][1000 genomes]
rs4851185	0.83[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.96[MKK][hapmap];0.82[YRI][hapmap]
rs4851187	0.92[CEU][hapmap];0.93[GIH][hapmap];0.93[TSI][hapmap];0.92[EUR][1000 genomes]
rs4851188	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62154638	0.90[ASN][1000 genomes]
rs6542846	0.81[ASN][1000 genomes]
rs6542863	0.87[EUR][1000 genomes]
rs6542864	0.92[CEU][hapmap];0.86[GIH][hapmap];0.84[TSI][hapmap];0.87[EUR][1000 genomes]
rs6542865	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs6542866	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6542868	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6542869	0.84[EUR][1000 genomes]
rs6542870	0.84[EUR][1000 genomes]
rs6707462	0.81[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs6708576	0.92[CEU][hapmap];0.86[GIH][hapmap];0.86[TSI][hapmap];0.84[EUR][1000 genomes]
rs6708878	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6712704	0.87[EUR][1000 genomes]
rs6717723	0.92[CEU][hapmap];0.89[EUR][1000 genomes]
rs6717729	0.92[CEU][hapmap];0.86[GIH][hapmap];0.86[TSI][hapmap];0.84[EUR][1000 genomes]
rs6722164	0.81[ASN][1000 genomes]
rs6724476	0.87[ASN][1000 genomes]
rs6727749	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6733285	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.83[YRI][hapmap]
rs6735801	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.90[ASN][1000 genomes]
rs6737257	0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.80[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs6739579	0.87[EUR][1000 genomes]
rs6740054	0.82[ASN][1000 genomes]
rs6741772	0.92[CEU][hapmap]
rs6741773	0.80[EUR][1000 genomes]
rs6743355	0.87[EUR][1000 genomes]
rs6750876	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs6751927	0.90[CEU][hapmap];0.93[EUR][1000 genomes]
rs6753063	0.91[CEU][hapmap];0.84[EUR][1000 genomes]
rs6753650	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6754843	0.81[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs6756650	0.91[CEU][hapmap];0.84[EUR][1000 genomes]
rs6756880	0.82[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs6757661	0.84[EUR][1000 genomes]
rs720228	0.87[CEU][hapmap];0.93[GIH][hapmap];0.91[TSI][hapmap];0.92[EUR][1000 genomes]
rs720229	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7349217	0.92[CEU][hapmap];0.86[GIH][hapmap];0.86[TSI][hapmap];0.82[EUR][1000 genomes]
rs7558004	0.84[EUR][1000 genomes]
rs7570657	0.81[CHB][hapmap];0.81[JPT][hapmap];0.90[ASN][1000 genomes]
rs7571390	0.83[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.93[MKK][hapmap];0.82[YRI][hapmap];0.87[ASN][1000 genomes]
rs7572660	0.84[EUR][1000 genomes]
rs7577477	0.92[CEU][hapmap];0.87[EUR][1000 genomes]
rs7584809	0.87[EUR][1000 genomes]
rs7586608	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7588059	0.82[ASN][1000 genomes]
rs7591794	0.82[ASN][1000 genomes]
rs7604557	0.93[EUR][1000 genomes]
rs7605734	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.89[ASN][1000 genomes]
rs7605843	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs7606635	0.83[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.96[MKK][hapmap];0.82[YRI][hapmap];0.89[ASN][1000 genomes]
rs7608938	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8179690	0.92[CEU][hapmap];0.86[GIH][hapmap];0.86[TSI][hapmap];0.84[EUR][1000 genomes]
rs9710648	0.83[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.94[MKK][hapmap];0.82[YRI][hapmap]
rs9941561	0.92[CEU][hapmap];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431424	chr2:99652682-100494682	Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv1013507	chr2:99729047-99861692	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

mRNA abundance (count:19)

SNP	Gene	Cis/trans	Tissue	Source
rs1133977	TSGA10	cis	multi-tissue	Pritchard
rs1133977	TSGA10	cis	parietal	SCAN
rs1133977	MITD1	Cis_1M	lymphoblastoid	RTeQTL
rs1133977	TSGA10	cis	lymphoblastoid	seeQTL
rs1133977	TSGA10	cis	cerebellum	SCAN
rs1133977	LIPT1	Cis_1M	lymphoblastoid	RTeQTL
rs1133977	LIPT1	cis	lesional skin	skin_eQTL
rs1133977	REV1L	cis	multi-tissue	Pritchard
rs1133977	TSGA10	cis	Thyroid	GTEx
rs1133977	TSGA10	cis	Lymphoblastoid	GTEx
rs1133977	TSGA10	cis	Skin Sun Exposed Lower leg	GTEx
rs1133977	LIPT1	cis	cerebellum	SCAN
rs1133977	TSGA10	cis	lung	GTEx
rs1133977	TSGA10	cis	Esophagus Mucosa	GTEx
rs1133977	LIPT1	cis	parietal	SCAN
rs1133977	LIPT1	cis	uninvolved skin	skin_eQTL
rs1133977	LIPT1	cis	multi-tissue	Pritchard
rs1133977	LIPT1	cis	lymphoblastoid	seeQTL
rs1133977	TSGA10	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:99736400-99742200	Weak transcription	Pancreas	Pancrea
2	chr2:99738000-99742000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr2:99738200-99742200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr2:99738600-99742000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr2:99738800-99743800	Weak transcription	HepG2	liver
6	chr2:99739200-99742000	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr2:99739200-99742200	Weak transcription	Small Intestine	intestine
8	chr2:99739200-99746000	Weak transcription	Primary B cells from cord blood	blood
9	chr2:99739600-99744000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr2:99739600-99744000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr2:99739800-99742000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr2:99739800-99742000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr2:99739800-99742200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr2:99740200-99742000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr2:99740200-99742000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr2:99740200-99742200	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr2:99740200-99742400	Weak transcription	NHEK	skin
18	chr2:99740400-99742000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr2:99740400-99742000	Weak transcription	Placenta	Placenta
20	chr2:99740400-99742200	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr2:99740600-99742200	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr2:99740600-99742200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr2:99740600-99742200	Weak transcription	Colonic Mucosa	Colon
24	chr2:99740600-99742200	Weak transcription	Thymus	Thymus
25	chr2:99740600-99743000	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
26	chr2:99740600-99744000	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr2:99740600-99744400	Weak transcription	Primary monocytes fromperipheralblood	blood
28	chr2:99740600-99745000	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr2:99740800-99742000	Weak transcription	Fetal Lung	lung
30	chr2:99740800-99742000	Weak transcription	Stomach Smooth Muscle	stomach
31	chr2:99740800-99742200	Weak transcription	Primary hematopoietic stem cells	blood
32	chr2:99740800-99742200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr2:99740800-99744800	Weak transcription	Brain Substantia Nigra	brain
34	chr2:99741000-99742000	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr2:99741200-99742000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
36	chr2:99741200-99742400	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr2:99741200-99743400	Strong transcription	Rectal Mucosa Donor 31	rectum
38	chr2:99741200-99744400	Weak transcription	Fetal Thymus	thymus
39	chr2:99741400-99742200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr2:99741400-99742200	Strong transcription	Liver	Liver
41	chr2:99741400-99742400	Strong transcription	Primary B cells from peripheral blood	blood
42	chr2:99741400-99742800	Strong transcription	HUES48 Cell Line	embryonic stem cell
43	chr2:99741400-99742800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
44	chr2:99741400-99742800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr2:99741400-99742800	Strong transcription	Brain Angular Gyrus	brain
46	chr2:99741400-99743000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr2:99741400-99743400	Strong transcription	Brain Anterior Caudate	brain
48	chr2:99741400-99743600	Strong transcription	Brain Hippocampus Middle	brain
49	chr2:99741600-99742000	Weak transcription	Fetal Intestine Large	intestine
50	chr2:99741600-99742200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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