Variant report

Variant	rs2516830
Chromosome Location	chr2:99773702-99773703
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr2:99773391-99773782	GM12891	blood:	n/a	n/a
2	EP300	chr2:99773318-99773719	GM12878	blood:	n/a	chr2:99773672-99773686
3	SPI1	chr2:99773178-99773812	GM12878	blood:	n/a	n/a
4	SPI1	chr2:99773374-99773723	GM12878	blood:	n/a	n/a
5	SPI1	chr2:99773183-99773809	HL-60	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr2:99767297..99778137-chr2:99793643..99800044,16	MCF-7	breast:
2	chr2:99769587..99774574-chr2:99795787..99799597,12	MCF-7	breast:
3	chr2:99773460..99775847-chr2:99795647..99797318,2	K562	blood:
4	chr2:99772739..99776053-chr2:99782752..99785644,3	K562	blood:
5	chr2:99772683..99774239-chr2:99783479..99785071,2	K562	blood:

Variant related genes	Relation type
TSGA10	TF binding region
ENSG00000185414	Chromatin interaction
ENSG00000241962	Chromatin interaction
ENSG00000158411	Chromatin interaction

Extended variants
information (count: 161 )
Associated
traits (count: 12 )

rSNPs within LD-proxies of this variant (count:158)

rs_ID	r²[population]
rs10167390	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10170063	0.87[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs10181344	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10181422	0.81[ASN][1000 genomes]
rs1044575	0.85[EUR][1000 genomes]
rs10865029	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs11123761	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs11123762	0.84[EUR][1000 genomes]
rs11123763	0.84[EUR][1000 genomes]
rs11123764	0.84[EUR][1000 genomes]
rs11123765	0.92[CEU][hapmap];0.92[EUR][1000 genomes]
rs11123766	0.85[EUR][1000 genomes]
rs11123770	0.95[EUR][1000 genomes]
rs1115756	0.91[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs1115757	0.93[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs1133977	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1133978	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11674894	0.96[CEU][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11677247	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs11677321	0.80[EUR][1000 genomes]
rs11678456	0.83[EUR][1000 genomes]
rs11683107	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11683188	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11685759	0.91[EUR][1000 genomes]
rs11688004	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11689265	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs11692336	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11692669	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11692699	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs11693427	0.84[EUR][1000 genomes]
rs11695379	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs11695751	0.92[CEU][hapmap];0.89[EUR][1000 genomes]
rs11883676	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs11890338	0.86[EUR][1000 genomes]
rs11895749	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11900670	0.84[EUR][1000 genomes]
rs11903311	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12470471	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12613624	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12619780	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12621007	0.91[EUR][1000 genomes]
rs12987548	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12991189	0.90[EUR][1000 genomes]
rs12992218	0.86[EUR][1000 genomes]
rs12992930	0.85[EUR][1000 genomes]
rs12995473	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs12999417	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs13000731	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13004491	0.82[EUR][1000 genomes]
rs13008171	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13008496	0.91[CEU][hapmap]
rs13009147	0.91[CEU][hapmap];0.84[EUR][1000 genomes]
rs13012481	0.84[EUR][1000 genomes]
rs13018891	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs13022329	0.84[EUR][1000 genomes]
rs13023501	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13023744	0.89[EUR][1000 genomes]
rs13026928	0.85[EUR][1000 genomes]
rs13030961	0.92[CEU][hapmap];0.90[EUR][1000 genomes]
rs13031919	0.89[EUR][1000 genomes]
rs13033012	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13035311	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs13035357	0.99[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13407840	0.83[ASN][1000 genomes]
rs13798	0.91[CEU][hapmap];0.85[EUR][1000 genomes]
rs1453563	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1453564	0.82[ASN][1000 genomes]
rs1563106	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1563107	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1563108	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs17708262	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17759607	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2084988	1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.85[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs2123686	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2171359	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs2309581	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs2516827	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs2516828	0.86[EUR][1000 genomes]
rs2516829	0.83[CEU][hapmap];0.86[EUR][1000 genomes]
rs2516832	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs2516833	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2516834	0.92[CEU][hapmap];0.90[EUR][1000 genomes]
rs2516835	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2516836	0.85[EUR][1000 genomes]
rs2632260	0.92[CEU][hapmap];0.92[EUR][1000 genomes]
rs2632261	0.86[EUR][1000 genomes]
rs2632277	0.91[CEU][hapmap];0.92[EUR][1000 genomes]
rs2632283	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2632284	0.89[EUR][1000 genomes]
rs28648058	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2964969	0.85[EUR][1000 genomes]
rs2969379	0.92[EUR][1000 genomes]
rs34252185	0.89[EUR][1000 genomes]
rs34272114	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34766932	0.82[EUR][1000 genomes]
rs36071868	0.89[EUR][1000 genomes]
rs4340581	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs4347885	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4374423	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4402818	0.83[EUR][1000 genomes]
rs4588238	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs4850897	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4851183	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs4851185	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4851187	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs4851188	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62154638	0.88[ASN][1000 genomes]
rs6542846	0.82[ASN][1000 genomes]
rs6542863	0.84[EUR][1000 genomes]
rs6542864	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs6542865	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs6542866	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6542868	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6542869	0.85[EUR][1000 genomes]
rs6542870	0.85[EUR][1000 genomes]
rs6707462	0.82[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs6708576	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs6708878	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6712704	0.84[EUR][1000 genomes]
rs6717723	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs6717729	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs6722164	0.81[ASN][1000 genomes]
rs6724476	0.82[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs6727749	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6733285	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs6735801	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs6737257	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs6739579	0.84[EUR][1000 genomes]
rs6740054	0.83[ASN][1000 genomes]
rs6741772	0.92[CEU][hapmap]
rs6743355	0.84[EUR][1000 genomes]
rs6750876	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6751927	0.91[CEU][hapmap];0.90[EUR][1000 genomes]
rs6753063	0.91[CEU][hapmap];0.85[EUR][1000 genomes]
rs6753650	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6754843	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs6756650	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs6756880	0.83[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6757661	0.85[EUR][1000 genomes]
rs720228	0.87[CEU][hapmap];0.89[EUR][1000 genomes]
rs720229	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7349217	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs7558004	0.85[EUR][1000 genomes]
rs7570657	0.82[CHB][hapmap];0.82[JPT][hapmap];0.90[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs7571390	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs7572660	0.85[EUR][1000 genomes]
rs7577477	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs7584809	0.84[EUR][1000 genomes]
rs7586608	0.81[ASN][1000 genomes]
rs7591794	0.83[ASN][1000 genomes]
rs7604557	0.90[EUR][1000 genomes]
rs7605734	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs7605843	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs7606635	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs7608938	0.80[CHB][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8179690	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs9710648	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9941561	0.92[CEU][hapmap];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431424	chr2:99652682-100494682	Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv1013507	chr2:99729047-99861692	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv535839	chr2:99742621-99793747	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:12)

SNP	Gene	Cis/trans	Tissue	Source
rs2516830	LIPT1	cis	uninvolved skin	skin_eQTL
rs2516830	TSGA10	cis	Skin Sun Exposed Lower leg	GTEx
rs2516830	LIPT1	Cis_1M	lymphoblastoid	RTeQTL
rs2516830	TSGA10	cis	lung	GTEx
rs2516830	TSGA10	cis	Thyroid	GTEx
rs2516830	LIPT1	cis	lesional skin	skin_eQTL
rs2516830	TSGA10	cis	Lymphoblastoid	GTEx
rs2516830	TSGA10	cis	Esophagus Mucosa	GTEx
rs2516830	TSGA10	Cis_1M	lymphoblastoid	RTeQTL
rs2516830	TSGA10	cis	multi-tissue	Pritchard
rs2516830	MITD1	Cis_1M	lymphoblastoid	RTeQTL
rs2516830	TSGA10	cis	Whole Blood	GTEx

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:99772200-99795600	Weak transcription	Gastric	stomach
2	chr2:99772400-99775800	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr2:99772400-99775800	Weak transcription	Esophagus	oesophagus
4	chr2:99772400-99776800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr2:99772400-99777000	Weak transcription	Placenta	Placenta
6	chr2:99772400-99781600	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr2:99772400-99782000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr2:99772400-99782800	Weak transcription	Aorta	Aorta
9	chr2:99772400-99784000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr2:99772400-99784000	Weak transcription	Lung	lung
11	chr2:99772400-99784000	Weak transcription	Spleen	Spleen
12	chr2:99772400-99784800	Weak transcription	Pancreas	Pancrea
13	chr2:99772400-99786200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr2:99772400-99786200	Weak transcription	Psoas Muscle	Psoas
15	chr2:99772400-99795600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr2:99772400-99795600	Weak transcription	Small Intestine	intestine
17	chr2:99772400-99796400	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr2:99772400-99796600	Weak transcription	Right Ventricle	heart
19	chr2:99772400-99796800	Weak transcription	Colonic Mucosa	Colon
20	chr2:99772400-99797000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr2:99772600-99773800	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr2:99772600-99774000	Enhancers	Primary T killer memory cells from peripheral blood	blood
23	chr2:99772600-99774200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
24	chr2:99772600-99775800	Weak transcription	Fetal Brain Female	brain
25	chr2:99772600-99776000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr2:99772600-99776000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr2:99772600-99776400	Weak transcription	Primary monocytes fromperipheralblood	blood
28	chr2:99772600-99778400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr2:99772600-99778400	Weak transcription	NHDF-Ad	bronchial
30	chr2:99772600-99778800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr2:99772600-99778800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr2:99772600-99781800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr2:99772600-99782200	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr2:99772600-99782200	Weak transcription	HUVEC	blood vessel
35	chr2:99772600-99783600	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr2:99772600-99783600	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr2:99772600-99784000	Weak transcription	Thymus	Thymus
38	chr2:99772600-99784200	Weak transcription	HSMMtube	muscle
39	chr2:99772600-99784400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr2:99772600-99784800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr2:99772600-99784800	Weak transcription	NH-A	brain
42	chr2:99772600-99786200	Weak transcription	NHLF	lung
43	chr2:99772600-99795800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr2:99772600-99796600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr2:99772600-99796600	Weak transcription	Fetal Kidney	kidney
46	chr2:99772600-99797000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
47	chr2:99772800-99773800	Enhancers	Breast Myoepithelial Primary Cells	Breast
48	chr2:99772800-99773800	Enhancers	Primary B cells from cord blood	blood
49	chr2:99772800-99773800	Genic enhancers	Dnd41	blood
50	chr2:99772800-99773800	Enhancers	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links