Variant report

Variant	rs1135237
Chromosome Location	chr17:17000546-17000547
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:16992165..16993827-chr17:16999457..17002093,2	K562	blood:
2	chr17:17000263..17003828-chr17:17006059..17008926,3	MCF-7	breast:
3	chr17:16989031..16991528-chr17:17000273..17002775,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1124961	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17794159	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3924340	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4078062	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55784627	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55845242	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55881490	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55881582	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56028083	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56066973	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56129495	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56243350	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56265828	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56280941	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56385540	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059280	chr17:16975059-17017957	Enhancers Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:16986800-17013600	Weak transcription	HUVEC	blood vessel
2	chr17:16988800-17000600	Weak transcription	Aorta	Aorta
3	chr17:16992400-17010000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr17:16993000-17000600	Strong transcription	Primary T cells from cord blood	blood
5	chr17:16993200-17003800	Genic enhancers	Fetal Intestine Small	intestine
6	chr17:16993400-17011400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr17:16994600-17003400	Enhancers	Ovary	ovary
8	chr17:16994600-17011600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr17:16995200-17001000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr17:16995400-17001600	Weak transcription	Brain Germinal Matrix	brain
11	chr17:16995400-17002400	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr17:16996000-17001000	Weak transcription	Fetal Brain Female	brain
13	chr17:16996400-17006200	Weak transcription	Liver	Liver
14	chr17:16997000-17016600	Enhancers	Left Ventricle	heart
15	chr17:16997200-17005000	Weak transcription	K562	blood
16	chr17:16997400-17006200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr17:16997400-17010000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr17:16998000-17001000	Strong transcription	Fetal Thymus	thymus
19	chr17:16998000-17001200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr17:16998000-17003600	Genic enhancers	Fetal Stomach	stomach
21	chr17:16998200-17000600	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr17:16998200-17002800	Enhancers	NHDF-Ad	bronchial
23	chr17:16998200-17016200	Enhancers	Fetal Heart	heart
24	chr17:16998400-17000600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr17:16998400-17001600	Enhancers	Fetal Intestine Large	intestine
26	chr17:16998400-17002600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr17:16998400-17002600	Enhancers	Stomach Mucosa	stomach
28	chr17:16998600-17000600	Genic enhancers	NHEK	skin
29	chr17:16998600-17001200	Enhancers	Right Ventricle	heart
30	chr17:16998600-17001800	Genic enhancers	Fetal Muscle Trunk	muscle
31	chr17:16998600-17002200	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr17:16998600-17002200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr17:16998600-17002600	Enhancers	Brain Substantia Nigra	brain
34	chr17:16998600-17002800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr17:16998600-17003800	Enhancers	Right Atrium	heart
36	chr17:16998600-17004000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr17:16998600-17006800	Enhancers	Psoas Muscle	Psoas
38	chr17:16998600-17015400	Genic enhancers	Fetal Muscle Leg	muscle
39	chr17:16998600-17016600	Enhancers	Skeletal Muscle Female	skeletal muscle
40	chr17:16998800-17000600	Enhancers	Colonic Mucosa	Colon
41	chr17:16998800-17000600	Enhancers	Small Intestine	intestine
42	chr17:16998800-17001000	Enhancers	HMEC	breast
43	chr17:16998800-17001800	Genic enhancers	Brain Dorsolateral Prefrontal Cortex	brain
44	chr17:16998800-17001800	Strong transcription	Dnd41	blood
45	chr17:16998800-17002200	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr17:16998800-17003000	Enhancers	Brain Cingulate Gyrus	brain
47	chr17:16999000-17000600	Enhancers	Brain Inferior Temporal Lobe	brain
48	chr17:16999000-17001000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr17:16999000-17001000	Genic enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr17:16999000-17002000	Strong transcription	Thymus	Thymus

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