Variant report

Variant	rs55881582
Chromosome Location	chr17:17059942-17059943
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr17:17059900-17060050	HEEpiC	esophagus:	n/a	chr17:17059926-17059934
2	NFIC	chr17:17059253-17059985	ECC-1	luminal epithelium:	n/a	n/a
3	POLR2A	chr17:17059296-17060288	U87	brain:	n/a	n/a
4	EP300	chr17:17059136-17059944	ECC-1	luminal epithelium:	n/a	n/a
5	RCOR1	chr17:17058847-17060569	IMR90	lung:	n/a	n/a
6	POLR2A	chr17:17059456-17060257	U87	brain:	n/a	n/a
7	MAX	chr17:17059268-17060124	ECC-1	luminal epithelium:	n/a	n/a
8	TCF12	chr17:17059218-17059953	ECC-1	luminal epithelium:	n/a	chr17:17059563-17059573

Variant related genes	Relation type
MPRIP	TF binding region

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1124961	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1135237	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17794159	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3924340	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4078062	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs55784627	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55845242	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55881490	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56028083	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56066973	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56129495	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56243350	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56265828	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56280941	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56385540	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907728	chr17:17013189-17095487	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv524958	chr17:17029718-17060805	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17029800-17088400	Strong transcription	Dnd41	blood
2	chr17:17030000-17088000	Strong transcription	Duodenum Mucosa	Duodenum
3	chr17:17030400-17079200	Strong transcription	Sigmoid Colon	Sigmoid Colon
4	chr17:17030400-17089200	Strong transcription	Fetal Intestine Large	intestine
5	chr17:17031000-17078800	Strong transcription	Rectal Mucosa Donor 29	rectum
6	chr17:17031200-17067800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr17:17032000-17073800	Strong transcription	Fetal Lung	lung
8	chr17:17032200-17073600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr17:17034800-17072800	Strong transcription	Placenta Amnion	Placenta Amnion
10	chr17:17037200-17074200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr17:17038400-17093800	Strong transcription	Fetal Brain Female	brain
12	chr17:17044200-17083600	Strong transcription	Thymus	Thymus
13	chr17:17045000-17088400	Strong transcription	Brain Germinal Matrix	brain
14	chr17:17045200-17071600	Strong transcription	Primary B cells from cord blood	blood
15	chr17:17045200-17075600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr17:17045200-17093800	Strong transcription	Fetal Stomach	stomach
17	chr17:17045600-17071000	Strong transcription	HUES48 Cell Line	embryonic stem cell
18	chr17:17045600-17072800	Strong transcription	HUES6 Cell Line	embryonic stem cell
19	chr17:17045800-17065600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr17:17047600-17066200	Weak transcription	K562	blood
21	chr17:17050400-17073800	Strong transcription	Fetal Muscle Leg	muscle
22	chr17:17051000-17093200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr17:17053000-17078000	Strong transcription	Primary B cells from peripheral blood	blood
24	chr17:17053200-17060600	Genic enhancers	NHEK	skin
25	chr17:17053200-17060800	Genic enhancers	HMEC	breast
26	chr17:17053200-17061000	Strong transcription	HUES64 Cell Line	embryonic stem cell
27	chr17:17053200-17067200	Strong transcription	HepG2	liver
28	chr17:17053200-17072600	Strong transcription	Pancreas	Pancrea
29	chr17:17053200-17074600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr17:17053200-17088200	Strong transcription	Gastric	stomach
31	chr17:17053400-17062800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr17:17053600-17060600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr17:17054000-17062200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr17:17054200-17061800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr17:17054600-17064000	Strong transcription	iPS-15b Cell Line	embryonic stem cell
36	chr17:17054600-17067000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
37	chr17:17054800-17087000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr17:17055200-17060000	Strong transcription	Stomach Mucosa	stomach
39	chr17:17055200-17065600	Strong transcription	GM12878-XiMat	blood
40	chr17:17055200-17073000	Strong transcription	Placenta	Placenta
41	chr17:17055200-17089400	Strong transcription	Rectal Mucosa Donor 31	rectum
42	chr17:17055400-17060200	Weak transcription	Small Intestine	intestine
43	chr17:17055400-17071400	Strong transcription	H9 Cell Line	embryonic stem cell
44	chr17:17055400-17072400	Strong transcription	Ovary	ovary
45	chr17:17055600-17064000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr17:17055600-17092600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr17:17055800-17061800	Strong transcription	Hela-S3	cervix
48	chr17:17055800-17064200	Genic enhancers	Fetal Thymus	thymus
49	chr17:17055800-17092600	Strong transcription	Cortex derived primary cultured neurospheres	brain
50	chr17:17056000-17060800	Strong transcription	HUVEC	blood vessel

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