Variant report

Variant	rs56265828
Chromosome Location	chr17:16992221-16992222
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:16984318..16990325-chr17:16990439..16995530,6	K562	blood:
2	chr17:16944252..16948072-chr17:16988311..16992318,5	MCF-7	breast:
3	chr17:16985150..16987702-chr17:16991603..16994396,2	MCF-7	breast:
4	chr17:16992165..16993827-chr17:16999457..17002093,2	K562	blood:
5	chr17:16991616..16993705-chr17:17019243..17022141,2	MCF-7	breast:
6	chr17:16990609..16992779-chr17:16995614..16997816,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000133030	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1124961	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1135237	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17794159	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3924340	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4078062	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55784627	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs55845242	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55881490	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs55881582	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56028083	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56066973	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56129495	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56243350	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56280941	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56385540	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059280	chr17:16975059-17017957	Enhancers Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:16952600-16996400	Weak transcription	Fetal Brain Male	brain
2	chr17:16973600-16997600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr17:16974000-16995400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr17:16977400-16992400	Strong transcription	Hela-S3	cervix
5	chr17:16978800-16996800	Strong transcription	Dnd41	blood
6	chr17:16981600-16995000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr17:16981600-16995400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr17:16981800-16995400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr17:16982000-16995400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr17:16982000-16995400	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr17:16982000-16995600	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr17:16982800-16995400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr17:16983000-16996400	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr17:16983400-16995400	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr17:16985200-16993200	Strong transcription	Fetal Intestine Small	intestine
16	chr17:16985200-16996000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr17:16985400-16993800	Strong transcription	Fetal Stomach	stomach
18	chr17:16985600-16996800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr17:16986000-16993600	Strong transcription	Stomach Smooth Muscle	stomach
20	chr17:16986000-16995000	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr17:16986000-16995800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr17:16986400-16995400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr17:16986800-16996000	Weak transcription	Rectal Smooth Muscle	rectum
24	chr17:16986800-16997600	Weak transcription	NHDF-Ad	bronchial
25	chr17:16986800-17013600	Weak transcription	HUVEC	blood vessel
26	chr17:16987400-16996200	Genic enhancers	Fetal Muscle Trunk	muscle
27	chr17:16987400-16996200	Genic enhancers	Fetal Muscle Leg	muscle
28	chr17:16988000-16999800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr17:16988200-17000000	Weak transcription	Fetal Kidney	kidney
30	chr17:16988400-16996400	Genic enhancers	Placenta	Placenta
31	chr17:16988600-16995600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr17:16988800-17000600	Weak transcription	Aorta	Aorta
33	chr17:16989000-16993200	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr17:16989200-16992800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr17:16989400-16992400	Genic enhancers	Esophagus	oesophagus
36	chr17:16989400-16993400	Genic enhancers	Primary T cells fromperipheralblood	blood
37	chr17:16989400-16995200	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
38	chr17:16989400-16995800	Strong transcription	Cortex derived primary cultured neurospheres	brain
39	chr17:16989600-16994600	Enhancers	Brain Anterior Caudate	brain
40	chr17:16989600-16994600	Genic enhancers	A549	lung
41	chr17:16989600-16995000	Enhancers	Liver	Liver
42	chr17:16989600-16995000	Genic enhancers	HMEC	breast
43	chr17:16989600-16995600	Genic enhancers	Spleen	Spleen
44	chr17:16989600-16997400	Enhancers	Skeletal Muscle Female	skeletal muscle
45	chr17:16989800-16992800	Strong transcription	Fetal Lung	lung
46	chr17:16989800-16993200	Enhancers	K562	blood
47	chr17:16989800-16994400	Enhancers	Left Ventricle	heart
48	chr17:16989800-16995000	Genic enhancers	Lung	lung
49	chr17:16989800-16996400	Strong transcription	Primary B cells from cord blood	blood
50	chr17:16990000-16994200	Enhancers	Right Atrium	heart

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