Variant report

Variant	rs1144297
Chromosome Location	chr1:75740332-75740333
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10493571	0.88[CEU][hapmap]
rs10493573	0.84[CEU][hapmap]
rs11162738	0.85[EUR][1000 genomes]
rs11162810	0.89[CEU][hapmap];0.89[JPT][hapmap];0.86[EUR][1000 genomes]
rs11162944	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11163089	0.92[CEU][hapmap]
rs11163114	0.85[CEU][hapmap]
rs11163154	0.85[CEU][hapmap]
rs11163185	0.81[CEU][hapmap]
rs1144298	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12030510	0.84[CEU][hapmap]
rs12042874	0.90[JPT][hapmap]
rs12044451	0.84[CEU][hapmap];0.89[JPT][hapmap];0.87[EUR][1000 genomes]
rs12404058	0.84[CEU][hapmap]
rs1249655	0.95[CEU][hapmap]
rs1249656	0.85[CEU][hapmap]
rs1249657	0.81[CEU][hapmap]
rs1249659	0.81[CEU][hapmap]
rs1249845	0.82[CEU][hapmap]
rs12562924	0.84[CEU][hapmap]
rs12726507	0.84[CEU][hapmap]
rs12741793	0.88[CEU][hapmap];0.90[JPT][hapmap];0.85[EUR][1000 genomes]
rs12744088	0.89[CEU][hapmap]
rs12756704	0.85[CEU][hapmap]
rs1343517	0.81[CEU][hapmap]
rs1394736	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1505258	0.82[CEU][hapmap]
rs1700893	0.92[CEU][hapmap]
rs1948874	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs2202473	0.90[JPT][hapmap]
rs2657206	0.84[CEU][hapmap]
rs599291	0.90[JPT][hapmap]
rs600734	0.90[JPT][hapmap]
rs609574	0.90[JPT][hapmap]
rs611899	0.90[JPT][hapmap]
rs627494	0.90[JPT][hapmap]
rs6656537	0.84[CEU][hapmap]
rs6658610	0.84[CEU][hapmap]
rs6689909	0.89[CEU][hapmap];0.90[JPT][hapmap];0.86[EUR][1000 genomes]
rs686453	0.90[JPT][hapmap]
rs687715	0.81[JPT][hapmap]
rs7516812	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7534079	0.80[CEU][hapmap]
rs7548993	0.89[CEU][hapmap]
rs975152	0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3368999	chr1:75524762-75933220	Bivalent/Poised TSS Strong transcription Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv997508	chr1:75709664-75748920	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1013952	chr1:75716654-75936048	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv535004	chr1:75716654-75936048	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	esv3451301	chr1:75722980-75744683	Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:75737800-75743000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr1:75738400-75740800	Enhancers	K562	blood
3	chr1:75739200-75741800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr1:75739800-75742400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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