Variant report
| Variant | rs1394736 |
|---|---|
| Chromosome Location | chr1:75717542-75717543 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs11162738 | 0.92[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs11162810 | 0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs11162944 | 0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs1144297 | 0.84[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs1144298 | 0.84[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs12042874 | 0.84[ASN][1000 genomes] |
| rs12044451 | 0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs12741793 | 0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs1948874 | 0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs2202473 | 0.80[ASN][1000 genomes] |
| rs599291 | 0.80[ASN][1000 genomes] |
| rs600734 | 0.80[ASN][1000 genomes] |
| rs609574 | 0.80[ASN][1000 genomes] |
| rs611899 | 0.80[ASN][1000 genomes] |
| rs615372 | 0.80[ASN][1000 genomes] |
| rs627494 | 0.80[ASN][1000 genomes] |
| rs642145 | 0.80[ASN][1000 genomes] |
| rs645287 | 0.80[ASN][1000 genomes] |
| rs6689909 | 0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs686453 | 0.80[ASN][1000 genomes] |
| rs687715 | 0.80[ASN][1000 genomes] |
| rs7516812 | 0.84[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs7534079 | 0.83[EUR][1000 genomes] |
| rs975152 | 0.84[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3368999 | chr1:75524762-75933220 | Bivalent/Poised TSS Strong transcription Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv997508 | chr1:75709664-75748920 | Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv1013952 | chr1:75716654-75936048 | Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv535004 | chr1:75716654-75936048 | ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:75711800-75718800 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |
| 2 | chr1:75716400-75723800 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
