Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10493571	0.82[TSI][hapmap]
rs10493573	0.80[GIH][hapmap]
rs11162810	0.92[CEU][hapmap];0.86[CHB][hapmap];0.81[JPT][hapmap];0.81[AMR][1000 genomes]
rs11163089	0.80[CEU][hapmap];0.84[TSI][hapmap]
rs1144297	0.80[CEU][hapmap]
rs12030510	0.80[GIH][hapmap]
rs12042874	0.82[JPT][hapmap]
rs12044451	0.88[CEU][hapmap];0.86[CHB][hapmap];0.81[JPT][hapmap];1.00[MEX][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12404058	0.80[GIH][hapmap]
rs1249655	0.90[CEU][hapmap]
rs12562924	0.80[GIH][hapmap]
rs12741793	0.92[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.81[AMR][1000 genomes]
rs1394736	0.83[EUR][1000 genomes]
rs1700893	0.83[CEU][hapmap]
rs1948874	0.92[CEU][hapmap];1.00[MEX][hapmap]
rs2202473	0.82[JPT][hapmap]
rs599291	0.82[JPT][hapmap]
rs600734	0.82[JPT][hapmap]
rs609574	0.82[JPT][hapmap]
rs611899	0.82[JPT][hapmap]
rs627494	0.82[JPT][hapmap]
rs6689909	0.92[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap]
rs686453	0.82[JPT][hapmap]
rs975152	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871743	chr1:75235082-75714554	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3368999	chr1:75524762-75933220	Bivalent/Poised TSS Strong transcription Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7534079	SNORD45B	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:75678800-75705400	Weak transcription	Fetal Brain Female	brain
2	chr1:75699800-75706800	Weak transcription	Fetal Brain Male	brain
3	chr1:75700200-75703400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr1:75701200-75715800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search: