Variant report

Variant	rs11465776
Chromosome Location	chr3:171924309-171924310
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:171920795..171922863-chr3:171922970..171925475,2	MCF-7	breast:
2	chr3:171922724..171926360-chr3:171926985..171928847,3	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11465747	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11465760	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11465765	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11465767	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11465768	1.00[AMR][1000 genomes]
rs11465771	1.00[AMR][1000 genomes]
rs11465772	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11465773	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11465775	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11465777	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11465785	1.00[AMR][1000 genomes]
rs17129678	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17129685	0.94[AFR][1000 genomes]
rs17129690	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17129692	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59613471	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61057879	1.00[AMR][1000 genomes]
rs72927024	1.00[AMR][1000 genomes]

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:171900200-171926400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:171900400-171926400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:171919400-171926400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:171919400-171926400	Weak transcription	Gastric	stomach
5	chr3:171919400-171926600	Weak transcription	Lung	lung
6	chr3:171919400-171927000	Weak transcription	Fetal Intestine Large	intestine
7	chr3:171919400-171927200	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr3:171919600-171926400	Weak transcription	Fetal Muscle Trunk	muscle
9	chr3:171919600-171926400	Weak transcription	Placenta	Placenta
10	chr3:171920200-171926400	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr3:171920400-171926400	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr3:171920600-171926400	Weak transcription	HUVEC	blood vessel
13	chr3:171920600-171930200	Weak transcription	K562	blood
14	chr3:171921400-171926400	Weak transcription	NHEK	skin
15	chr3:171921400-171926800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr3:171921600-171930200	Weak transcription	Small Intestine	intestine
17	chr3:171921800-171926400	Weak transcription	Esophagus	oesophagus
18	chr3:171921800-171928800	Weak transcription	NHDF-Ad	bronchial
19	chr3:171922000-171925200	Weak transcription	Psoas Muscle	Psoas
20	chr3:171922000-171926400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr3:171922000-171926400	Weak transcription	Spleen	Spleen
22	chr3:171922000-171930600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr3:171922200-171926000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr3:171922200-171926400	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr3:171922200-171926400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr3:171922200-171926400	Weak transcription	Fetal Intestine Small	intestine
27	chr3:171922600-171924400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr3:171922800-171926000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr3:171922800-171926000	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr3:171922800-171926000	Weak transcription	HMEC	breast
31	chr3:171922800-171926400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr3:171922800-171926400	Weak transcription	Fetal Muscle Leg	muscle
33	chr3:171922800-171926400	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr3:171922800-171926600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr3:171922800-171926800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr3:171922800-171927000	Weak transcription	Stomach Mucosa	stomach
37	chr3:171922800-171931400	Weak transcription	Duodenum Mucosa	Duodenum
38	chr3:171922800-171958400	Weak transcription	Primary T cells from cord blood	blood
39	chr3:171923000-171926400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr3:171923000-171926400	Weak transcription	Fetal Heart	heart
41	chr3:171923000-171926400	Weak transcription	Right Atrium	heart
42	chr3:171923000-171926600	Weak transcription	Liver	Liver
43	chr3:171923000-171926600	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr3:171923000-171926600	Weak transcription	Stomach Smooth Muscle	stomach
45	chr3:171923000-171927000	Weak transcription	Adipose Nuclei	Adipose
46	chr3:171923000-171927400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr3:171923000-171930400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr3:171923200-171926400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr3:171923200-171926400	Weak transcription	Left Ventricle	heart
50	chr3:171923200-171926600	Weak transcription	Aorta	Aorta

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