Variant report

Variant	rs61057879
Chromosome Location	chr1:67609004-67609005
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:67591574..67593270-chr1:67608776..67611381,2	K562	blood:

Variant related genes	Relation type
ENSG00000203963	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11465747	1.00[AMR][1000 genomes]
rs11465760	1.00[AMR][1000 genomes]
rs11465765	1.00[AMR][1000 genomes]
rs11465767	1.00[AMR][1000 genomes]
rs11465768	1.00[AMR][1000 genomes]
rs11465771	1.00[AMR][1000 genomes]
rs11465772	1.00[AMR][1000 genomes]
rs11465773	1.00[AMR][1000 genomes]
rs11465775	1.00[AMR][1000 genomes]
rs11465776	1.00[AMR][1000 genomes]
rs11465777	1.00[AMR][1000 genomes]
rs11465785	1.00[AMR][1000 genomes]
rs17129678	1.00[AMR][1000 genomes]
rs17129690	1.00[AMR][1000 genomes]
rs17129692	1.00[AMR][1000 genomes]
rs59613471	1.00[AMR][1000 genomes]
rs72927024	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461751	chr1:67479598-67689036	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv546445	chr1:67479598-67689036	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv461762	chr1:67551209-67648460	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv546446	chr1:67551209-67648460	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv870950	chr1:67575549-67627260	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:67605600-67609200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr1:67606600-67612200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr1:67607200-67609600	Enhancers	Primary T cells fromperipheralblood	blood
4	chr1:67607600-67609400	Enhancers	K562	blood
5	chr1:67607800-67614000	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr1:67608200-67609600	Enhancers	Fetal Thymus	thymus
7	chr1:67608200-67610000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
8	chr1:67608200-67610600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr1:67608200-67612800	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr1:67608200-67614200	Weak transcription	Fetal Intestine Small	intestine
11	chr1:67608400-67609600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr1:67608400-67610000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr1:67608400-67610600	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr1:67608400-67612800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr1:67608400-67614600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr1:67608600-67609200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr1:67608600-67609600	Enhancers	Stomach Mucosa	stomach
18	chr1:67608600-67610400	Enhancers	Primary T killer memory cells from peripheral blood	blood
19	chr1:67608800-67609600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
20	chr1:67609000-67609200	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr1:67609000-67609400	Flanking Active TSS	Primary T cells from cord blood	blood
22	chr1:67609000-67609400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
23	chr1:67609000-67609600	Enhancers	Small Intestine	intestine
24	chr1:67609000-67610400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr1:67609000-67610800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
26	chr1:67609000-67614800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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