Variant report

Variant	rs17129692
Chromosome Location	chr1:67638872-67638873
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11465747	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11465760	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11465765	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11465767	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11465768	1.00[AMR][1000 genomes]
rs11465771	1.00[AMR][1000 genomes]
rs11465772	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11465773	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11465775	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11465776	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11465777	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11465785	1.00[AMR][1000 genomes]
rs17129678	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17129685	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs17129690	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59613471	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61057879	1.00[AMR][1000 genomes]
rs72927024	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461751	chr1:67479598-67689036	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv546445	chr1:67479598-67689036	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv461762	chr1:67551209-67648460	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv546446	chr1:67551209-67648460	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:67635200-67639200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr1:67636600-67639400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr1:67637200-67639400	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr1:67637600-67639200	Enhancers	Primary T killer memory cells from peripheral blood	blood
5	chr1:67637800-67639200	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr1:67637800-67639200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr1:67638000-67639200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr1:67638000-67639400	Enhancers	Primary T cells from cord blood	blood
9	chr1:67638400-67640000	Weak transcription	GM12878-XiMat	blood
10	chr1:67638600-67639000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links