Variant report
| Variant | rs1146888 |
|---|---|
| Chromosome Location | chr13:76887683-76887684 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs1146883 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs1146884 | 0.85[EUR][1000 genomes] |
| rs1146886 | 0.85[EUR][1000 genomes] |
| rs1146887 | 0.86[EUR][1000 genomes] |
| rs1146890 | 0.84[ASN][1000 genomes] |
| rs1505141 | 0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1700826 | 0.89[ASN][1000 genomes] |
| rs1847629 | 0.91[CHB][hapmap];0.83[CHD][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs1929731 | 0.88[ASN][1000 genomes] |
| rs2657128 | 0.90[ASN][1000 genomes] |
| rs2777732 | 0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4142608 | 0.81[ASN][1000 genomes] |
| rs4142610 | 0.82[ASN][1000 genomes] |
| rs61963409 | 0.82[ASN][1000 genomes] |
| rs8001163 | 0.82[ASN][1000 genomes] |
| rs9544243 | 0.89[ASN][1000 genomes] |
| rs9544244 | 0.89[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1044736 | chr13:76728655-77066435 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 2 | esv3351026 | chr13:76886701-76888799 | Weak transcription | n/a | n/a | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs1146888 | ZNF766 | trans | cerebellum | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:76883200-76891200 | Weak transcription | Fetal Heart | heart |
