Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:76876047..76878935-chr13:77566060..77567792,2	K562	blood:
2	chr12:83286167..83286675-chr13:76878102..76878843,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000102805	Chromatin interaction

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1012085	0.96[AFR][1000 genomes]
rs1146883	0.91[ASN][1000 genomes]
rs1146888	0.86[ASN][1000 genomes]
rs1146890	0.86[ASN][1000 genomes]
rs1505141	0.91[ASN][1000 genomes]
rs1700826	0.93[ASN][1000 genomes]
rs17066099	0.87[ASN][1000 genomes]
rs17685818	0.91[AFR][1000 genomes]
rs1929731	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2657128	0.94[ASN][1000 genomes]
rs2777732	0.90[ASN][1000 genomes]
rs4142608	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4142610	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4646990	0.93[AFR][1000 genomes]
rs61963409	0.92[ASN][1000 genomes]
rs7316936	0.93[AFR][1000 genomes]
rs7317053	0.93[AFR][1000 genomes]
rs7318308	0.93[AFR][1000 genomes]
rs7318915	0.93[AFR][1000 genomes]
rs8001163	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9318421	0.85[ASN][1000 genomes]
rs9530536	0.87[ASN][1000 genomes]
rs9544242	0.93[AFR][1000 genomes]
rs9544243	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9544244	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054431	chr13:76460431-76885094	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv541837	chr13:76460431-76885094	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1044736	chr13:76728655-77066435	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be: