Variant report

Variant	rs17066099
Chromosome Location	chr13:76905010-76905011
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1146890	0.94[ASN][1000 genomes]
rs1505139	0.86[EUR][1000 genomes]
rs1505141	0.80[ASN][1000 genomes]
rs1700826	0.86[ASN][1000 genomes]
rs1847629	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1929731	0.84[ASN][1000 genomes]
rs2657128	0.86[ASN][1000 genomes]
rs4142608	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4142610	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61963409	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8001163	0.99[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs924894	0.86[ASN][1000 genomes]
rs924895	0.87[ASN][1000 genomes]
rs9318421	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9530536	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9544243	0.86[ASN][1000 genomes]
rs9544244	0.86[ASN][1000 genomes]
rs9544246	0.82[AFR][1000 genomes]
rs9544248	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044736	chr13:76728655-77066435	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:76899200-76911400	Weak transcription	Aorta	Aorta
2	chr13:76902800-76905800	Enhancers	Fetal Stomach	stomach
3	chr13:76903800-76906400	Enhancers	Rectal Smooth Muscle	rectum
4	chr13:76904200-76911600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr13:76905000-76905200	Enhancers	Psoas Muscle	Psoas
6	chr13:76905000-76907000	Enhancers	Colon Smooth Muscle	Colon
7	chr13:76905000-76907000	Enhancers	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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