Variant report

Variant	rs9544248
Chromosome Location	chr13:76907643-76907644
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1505137	0.97[ASN][1000 genomes]
rs1505139	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17066099	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1757889	0.97[ASN][1000 genomes]
rs2018477	0.97[ASN][1000 genomes]
rs4142608	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4142610	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61963409	0.86[EUR][1000 genomes]
rs9318421	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9530536	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044736	chr13:76728655-77066435	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:76899200-76911400	Weak transcription	Aorta	Aorta
2	chr13:76904200-76911600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr13:76905200-76912000	Weak transcription	Psoas Muscle	Psoas
4	chr13:76905400-76908400	Enhancers	Fetal Heart	heart
5	chr13:76906400-76909000	Weak transcription	Rectal Smooth Muscle	rectum
6	chr13:76906800-76908400	Weak transcription	Stomach Smooth Muscle	stomach
7	chr13:76907000-76908000	Weak transcription	Fetal Lung	lung
8	chr13:76907000-76909000	Weak transcription	Colon Smooth Muscle	Colon
9	chr13:76907000-76909400	Weak transcription	Fetal Stomach	stomach
10	chr13:76907400-76908000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links