Variant report

Variant	rs1147565
Chromosome Location	chr6:73305391-73305392
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:73292852..73295810-chr6:73304936..73306946,2	K562	blood:
2	chr6:73303155..73305514-chr6:73306318..73308143,2	K562	blood:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10455268	1.00[CHB][hapmap]
rs10484913	1.00[CHB][hapmap]
rs10485213	1.00[CHB][hapmap]
rs10943050	1.00[CHB][hapmap]
rs10943051	1.00[CHB][hapmap]
rs10943055	1.00[CHB][hapmap]
rs10943057	1.00[CHB][hapmap]
rs1147566	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1147567	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1202104	1.00[JPT][hapmap]
rs1202109	1.00[JPT][hapmap]
rs12189933	1.00[CHB][hapmap]
rs12194741	1.00[CHB][hapmap]
rs12197962	1.00[CHB][hapmap]
rs12199549	1.00[CHB][hapmap]
rs12200468	1.00[CHB][hapmap]
rs12200908	1.00[CHB][hapmap]
rs12204139	1.00[CHB][hapmap]
rs12204989	1.00[CHB][hapmap]
rs12205374	1.00[CHB][hapmap]
rs12208053	1.00[CHB][hapmap]
rs12208907	1.00[CHB][hapmap]
rs12210850	1.00[CHB][hapmap]
rs12211580	1.00[CHB][hapmap]
rs12212268	1.00[CHB][hapmap]
rs12212562	1.00[CHB][hapmap]
rs12212818	1.00[CHB][hapmap]
rs12214894	1.00[CHB][hapmap]
rs12214895	1.00[CHB][hapmap]
rs12215865	1.00[CHB][hapmap]
rs12374630	1.00[CHB][hapmap]
rs12374631	1.00[CHB][hapmap]
rs17692715	1.00[CHB][hapmap]
rs17692874	1.00[CHB][hapmap]
rs17692898	1.00[CHB][hapmap]
rs17729195	1.00[CHB][hapmap]
rs17749408	1.00[CHB][hapmap]
rs17749420	1.00[CHB][hapmap]
rs6453591	1.00[CHB][hapmap]
rs6931918	1.00[CHB][hapmap]
rs6935174	1.00[CHB][hapmap]
rs719830	1.00[CHB][hapmap]
rs7768673	1.00[CHB][hapmap]
rs7776215	1.00[CHB][hapmap]
rs9442826	0.85[AFR][1000 genomes]
rs9442827	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9446715	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9446716	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9446717	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs990501	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023809	chr6:73157813-73477997	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv538303	chr6:73157813-73477997	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3347486	chr6:73283590-73445976	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv981374	chr6:73293962-73308205	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73304000-73306200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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