Variant report

Variant	rs10455268
Chromosome Location	chr6:73290401-73290402
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:73268900..73271716-chr6:73288163..73291530,3	K562	blood:
2	chr6:73121627..73122548-chr6:73289674..73290658,7	MCF-7	breast:
3	chr6:73231768..73233090-chr6:73289801..73290784,5	MCF-7	breast:
4	chr6:73121603..73122560-chr6:73289749..73290721,9	MCF-7	breast:
5	chr6:73121592..73123278-chr6:73288779..73290697,35	K562	blood:

Variant related genes	Relation type
ENSG00000217483	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10484913	1.00[CHB][hapmap]
rs10485213	1.00[CHB][hapmap]
rs10943032	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10943033	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10943050	1.00[CHB][hapmap]
rs10943051	1.00[CHB][hapmap]
rs10943055	1.00[CHB][hapmap]
rs10943057	1.00[CHB][hapmap]
rs1202099	1.00[ASN][1000 genomes]
rs12189933	1.00[CHB][hapmap]
rs12194741	1.00[CHB][hapmap]
rs12197962	1.00[CHB][hapmap]
rs12199549	1.00[CHB][hapmap]
rs12200468	1.00[CHB][hapmap]
rs12200908	1.00[CHB][hapmap]
rs12201335	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12203517	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12203737	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12204139	1.00[CHB][hapmap]
rs12204989	1.00[CHB][hapmap]
rs12205054	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12205374	1.00[CHB][hapmap]
rs12207928	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12208053	0.92[CEU][hapmap];1.00[CHB][hapmap]
rs12208907	1.00[CHB][hapmap]
rs12210850	1.00[CHB][hapmap]
rs12211580	1.00[CHB][hapmap]
rs12211926	1.00[ASN][1000 genomes]
rs12212268	1.00[CHB][hapmap]
rs12212562	1.00[CHB][hapmap]
rs12212818	1.00[CHB][hapmap]
rs12214894	1.00[CHB][hapmap]
rs12214895	1.00[CHB][hapmap]
rs12215865	1.00[CHB][hapmap]
rs12374630	1.00[CHB][hapmap]
rs12374631	1.00[CHB][hapmap]
rs12528216	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12528915	1.00[ASN][1000 genomes]
rs17692715	1.00[CHB][hapmap]
rs17692874	1.00[CHB][hapmap]
rs17692898	1.00[CHB][hapmap]
rs17729195	1.00[CHB][hapmap]
rs17749408	1.00[CHB][hapmap]
rs17749420	1.00[CHB][hapmap]
rs62411967	1.00[ASN][1000 genomes]
rs62411969	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62411970	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6453591	1.00[CHB][hapmap]
rs67208941	1.00[ASN][1000 genomes]
rs6931918	1.00[CHB][hapmap]
rs6935174	1.00[CHB][hapmap]
rs719830	1.00[CHB][hapmap]
rs72950044	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7768673	1.00[CHB][hapmap]
rs7776215	1.00[CHB][hapmap]
rs9442812	1.00[ASN][1000 genomes]
rs9442817	1.00[ASN][1000 genomes]
rs9442820	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023809	chr6:73157813-73477997	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv538303	chr6:73157813-73477997	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3347486	chr6:73283590-73445976	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73289600-73290600	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr6:73289800-73290800	Enhancers	Hela-S3	cervix

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