Variant report

Variant	rs12528216
Chromosome Location	chr6:73273208-73273209
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:73270287..73274048-chr6:73274112..73277683,5	K562	blood:
2	chr6:73271338..73274048-chr6:73274112..73275955,2	K562	blood:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10455268	0.85[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10484913	1.00[CHB][hapmap]
rs10485213	1.00[CHB][hapmap]
rs10943032	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10943033	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10943050	1.00[CHB][hapmap]
rs10943051	1.00[CHB][hapmap]
rs10943055	1.00[CHB][hapmap]
rs10943057	1.00[CHB][hapmap]
rs1202099	1.00[ASN][1000 genomes]
rs12189933	1.00[CHB][hapmap]
rs12194741	1.00[CHB][hapmap]
rs12197962	1.00[CHB][hapmap]
rs12199549	1.00[CHB][hapmap]
rs12200468	1.00[CHB][hapmap]
rs12200908	1.00[CHB][hapmap]
rs12201335	1.00[ASN][1000 genomes]
rs12203517	1.00[ASN][1000 genomes]
rs12203737	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12204139	1.00[CHB][hapmap]
rs12204989	1.00[CHB][hapmap]
rs12205054	1.00[ASN][1000 genomes]
rs12205374	1.00[CHB][hapmap]
rs12207928	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12208053	0.93[CEU][hapmap];1.00[CHB][hapmap]
rs12208907	1.00[CHB][hapmap]
rs12210850	1.00[CHB][hapmap]
rs12211580	1.00[CHB][hapmap]
rs12211926	1.00[ASN][1000 genomes]
rs12212268	1.00[CHB][hapmap]
rs12212562	1.00[CHB][hapmap]
rs12212818	1.00[CHB][hapmap]
rs12214894	1.00[CHB][hapmap]
rs12214895	1.00[CHB][hapmap]
rs12215865	1.00[CHB][hapmap]
rs12374630	1.00[CHB][hapmap]
rs12374631	1.00[CHB][hapmap]
rs12528915	1.00[ASN][1000 genomes]
rs17692715	1.00[CHB][hapmap]
rs17692874	1.00[CHB][hapmap]
rs17692898	1.00[CHB][hapmap]
rs17729195	1.00[CHB][hapmap]
rs17749408	1.00[CHB][hapmap]
rs17749420	1.00[CHB][hapmap]
rs62411967	1.00[ASN][1000 genomes]
rs62411969	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62411970	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6453591	1.00[CHB][hapmap]
rs67208941	1.00[ASN][1000 genomes]
rs6931918	1.00[CHB][hapmap]
rs6935174	1.00[CHB][hapmap]
rs719830	1.00[CHB][hapmap]
rs72950044	1.00[ASN][1000 genomes]
rs7768673	1.00[CHB][hapmap]
rs7776215	1.00[CHB][hapmap]
rs9442812	1.00[ASN][1000 genomes]
rs9442817	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9442820	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023809	chr6:73157813-73477997	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv538303	chr6:73157813-73477997	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv981067	chr6:73273080-73276402	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73272800-73273600	Enhancers	K562	blood

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