Variant report

Variant	rs9442820
Chromosome Location	chr6:73262090-73262091
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10455268	1.00[ASN][1000 genomes]
rs10943032	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10943033	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1202099	1.00[ASN][1000 genomes]
rs12201335	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12203517	1.00[ASN][1000 genomes]
rs12203737	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12205054	1.00[ASN][1000 genomes]
rs12207928	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12211926	1.00[ASN][1000 genomes]
rs12528216	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12528915	1.00[ASN][1000 genomes]
rs62411967	1.00[ASN][1000 genomes]
rs62411969	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62411970	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67208941	1.00[ASN][1000 genomes]
rs72950044	1.00[ASN][1000 genomes]
rs9442812	1.00[ASN][1000 genomes]
rs9442817	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023809	chr6:73157813-73477997	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv538303	chr6:73157813-73477997	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73252200-73262200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:73257000-73264800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:73259000-73263400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr6:73260000-73262800	Enhancers	Muscle Satellite Cultured Cells	--
5	chr6:73261000-73262400	Enhancers	NHEK	skin
6	chr6:73261000-73265200	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr6:73261000-73266000	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr6:73261200-73262600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr6:73261200-73265800	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr6:73261400-73262400	Weak transcription	NH-A	brain
11	chr6:73261400-73262600	Enhancers	K562	blood
12	chr6:73261600-73262400	Enhancers	Pancreas	Pancrea
13	chr6:73261600-73262600	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr6:73261800-73262200	Weak transcription	HSMM	muscle
15	chr6:73261800-73262200	Weak transcription	Osteobl	bone
16	chr6:73262000-73262400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr6:73262000-73263400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links