Variant report

Variant	rs12203737
Chromosome Location	chr6:73270881-73270882
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:73268900..73271716-chr6:73288163..73291530,3	K562	blood:
2	chr6:73269291..73270899-chr6:73288717..73290392,2	K562	blood:
3	chr6:73270540..73272055-chr6:73334737..73337247,2	K562	blood:
4	chr6:73270229..73272908-chr6:73274722..73276357,2	MCF-7	breast:
5	chr6:73256179..73258970-chr6:73269448..73271155,2	K562	blood:
6	chr6:73270287..73274048-chr6:73274112..73277683,5	K562	blood:
7	chr6:73152078..73154373-chr6:73270636..73272523,2	K562	blood:
8	chr6:73169058..73171767-chr6:73269199..73271288,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10455268	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10943032	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10943033	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1202099	1.00[ASN][1000 genomes]
rs12201335	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12203517	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12205054	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12207928	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12211926	1.00[ASN][1000 genomes]
rs12528216	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12528915	1.00[ASN][1000 genomes]
rs62411967	1.00[ASN][1000 genomes]
rs62411969	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62411970	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67208941	1.00[ASN][1000 genomes]
rs72950044	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9442812	1.00[ASN][1000 genomes]
rs9442817	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9442820	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023809	chr6:73157813-73477997	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv538303	chr6:73157813-73477997	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73263800-73271000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:73269200-73271000	Active TSS	K562	blood
3	chr6:73269200-73271200	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr6:73269400-73271200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr6:73270000-73271000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:73270400-73271000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:73270400-73271000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:73270600-73271000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr6:73270600-73271200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr6:73270600-73271200	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr6:73270600-73271400	Enhancers	Osteobl	bone
12	chr6:73270600-73271800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr6:73270600-73271800	Enhancers	H9 Cell Line	embryonic stem cell
14	chr6:73270600-73271800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr6:73270600-73272000	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr6:73270600-73272000	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr6:73270600-73272000	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr6:73270800-73271000	Enhancers	H1 Cell Line	embryonic stem cell
19	chr6:73270800-73272000	Enhancers	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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