Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:73241866..73243556-chr6:73257472..73259393,2	K562	blood:
2	chr6:73242981..73244907-chr6:73253743..73256679,2	MCF-7	breast:
3	chr6:73235202..73238182-chr6:73242256..73244543,3	K562	blood:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10455268	0.85[CEU][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10943032	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10943033	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1202099	1.00[ASN][1000 genomes]
rs12201335	1.00[ASN][1000 genomes]
rs12203517	1.00[ASN][1000 genomes]
rs12203737	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12205054	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12208053	0.93[CEU][hapmap]
rs12211926	1.00[ASN][1000 genomes]
rs12528216	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12528915	1.00[ASN][1000 genomes]
rs62411967	1.00[ASN][1000 genomes]
rs62411969	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62411970	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67208941	1.00[ASN][1000 genomes]
rs72950044	1.00[ASN][1000 genomes]
rs9442812	1.00[ASN][1000 genomes]
rs9442817	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9442820	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023809	chr6:73157813-73477997	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv538303	chr6:73157813-73477997	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73240600-73250600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:73241800-73244200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr6:73242200-73244400	Enhancers	Osteobl	bone
4	chr6:73242200-73244600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr6:73242400-73243600	Enhancers	HSMM	muscle
6	chr6:73242600-73243600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:73243000-73243600	Enhancers	A549	lung
8	chr6:73243000-73244200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr6:73243000-73245200	Enhancers	K562	blood

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