Variant report

Variant	rs12208053
Chromosome Location	chr6:73308749-73308750
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10455268	0.92[CEU][hapmap];1.00[CHB][hapmap];0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10484913	1.00[CHB][hapmap]
rs10485213	1.00[CHB][hapmap]
rs10943032	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10943033	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10943050	1.00[CHB][hapmap]
rs10943051	1.00[CHB][hapmap]
rs10943055	1.00[CHB][hapmap]
rs10943057	1.00[CHB][hapmap]
rs1202099	1.00[ASN][1000 genomes]
rs12189933	1.00[CHB][hapmap]
rs12194741	1.00[CHB][hapmap]
rs12197962	1.00[CHB][hapmap]
rs12199549	1.00[CHB][hapmap]
rs12200468	1.00[CHB][hapmap]
rs12200908	1.00[CHB][hapmap]
rs12201335	1.00[ASN][1000 genomes]
rs12203517	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12203737	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12204139	1.00[CHB][hapmap]
rs12204989	1.00[CHB][hapmap]
rs12205054	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12205374	1.00[CHB][hapmap]
rs12207928	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12208907	1.00[CHB][hapmap]
rs12210850	1.00[CHB][hapmap]
rs12211580	1.00[CHB][hapmap]
rs12211926	1.00[ASN][1000 genomes]
rs12212268	1.00[CHB][hapmap]
rs12212562	1.00[CHB][hapmap]
rs12212818	1.00[CHB][hapmap]
rs12214894	1.00[CHB][hapmap]
rs12214895	1.00[CHB][hapmap]
rs12215865	1.00[CHB][hapmap]
rs12374630	1.00[CHB][hapmap]
rs12374631	1.00[CHB][hapmap]
rs12528216	1.00[ASN][1000 genomes]
rs12528915	1.00[ASN][1000 genomes]
rs17692715	1.00[CHB][hapmap]
rs17692874	1.00[CHB][hapmap]
rs17692898	1.00[CHB][hapmap]
rs17729195	1.00[CHB][hapmap]
rs17749408	1.00[CHB][hapmap]
rs17749420	1.00[CHB][hapmap]
rs62411967	1.00[ASN][1000 genomes]
rs62411969	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62411970	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6453591	1.00[CHB][hapmap]
rs67208941	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6931918	1.00[CHB][hapmap]
rs6935174	1.00[CHB][hapmap]
rs719830	1.00[CHB][hapmap]
rs72950044	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7768673	1.00[CHB][hapmap]
rs7776215	1.00[CHB][hapmap]
rs9442812	1.00[ASN][1000 genomes]
rs9442817	1.00[ASN][1000 genomes]
rs9442820	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023809	chr6:73157813-73477997	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv538303	chr6:73157813-73477997	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3347486	chr6:73283590-73445976	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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