Variant report

Variant	rs1147648
Chromosome Location	chr10:89955974-89955975
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:89954251..89956683-chr10:89959327..89961905,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1929318	0.88[ASN][1000 genomes]
rs1943987	0.81[EUR][1000 genomes]
rs473875	0.81[ASN][1000 genomes]
rs485396	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs508901	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs510559	0.94[ASN][1000 genomes]
rs533722	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs535541	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs537546	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs543338	0.93[EUR][1000 genomes]
rs551265	0.92[EUR][1000 genomes]
rs567645	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs629959	0.81[EUR][1000 genomes]
rs645516	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs647730	0.89[EUR][1000 genomes]
rs7898930	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831940	chr10:89811247-89989199	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89949800-89956200	Enhancers	Thymus	Thymus
2	chr10:89950400-89956400	Enhancers	Fetal Thymus	thymus
3	chr10:89950600-89956200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr10:89951000-89965600	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr10:89951800-89956600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr10:89952400-89956400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr10:89953200-89956200	Weak transcription	Fetal Muscle Leg	muscle
8	chr10:89954200-89956800	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr10:89954200-89957600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr10:89954400-89957800	Weak transcription	NHEK	skin
11	chr10:89954800-89956600	Enhancers	Fetal Stomach	stomach
12	chr10:89954800-89957600	Weak transcription	HMEC	breast
13	chr10:89955000-89956200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr10:89955000-89956400	Enhancers	Fetal Lung	lung
15	chr10:89955200-89956200	Weak transcription	Primary B cells from peripheral blood	blood
16	chr10:89955200-89956400	Enhancers	Liver	Liver
17	chr10:89955200-89960000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr10:89955400-89956200	Weak transcription	Right Atrium	heart
19	chr10:89955400-89959200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr10:89955400-89960400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr10:89955400-89962400	Weak transcription	Left Ventricle	heart
22	chr10:89955400-89963800	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr10:89955400-89965000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr10:89955400-89998000	Weak transcription	Aorta	Aorta
25	chr10:89955800-89956200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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