Variant report

Variant	rs645516
Chromosome Location	chr10:89967665-89967666
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1147648	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1943987	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs485396	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs508901	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs533722	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs535541	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs537546	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs543338	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs545874	0.91[ASN][1000 genomes]
rs551265	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs567645	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs629959	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs647730	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831940	chr10:89811247-89989199	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv895878	chr10:89959082-90006507	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89955400-89998000	Weak transcription	Aorta	Aorta
2	chr10:89964400-89969000	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr10:89965200-89967800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr10:89966000-89969000	Weak transcription	Psoas Muscle	Psoas
5	chr10:89966000-89969000	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr10:89966200-89968600	Weak transcription	HMEC	breast
7	chr10:89966200-89969600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr10:89966200-89970200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr10:89966400-89969200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr10:89966400-89973000	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr10:89966600-89969400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr10:89966600-89969600	Weak transcription	Fetal Lung	lung
13	chr10:89966800-89969400	Weak transcription	GM12878-XiMat	blood
14	chr10:89967200-89968000	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr10:89967600-89967800	Bivalent Enhancer	Placenta	Placenta
16	chr10:89967600-89967800	Enhancers	Pancreas	Pancrea
17	chr10:89967600-89968000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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